GitHub
https://github.com/imperialcollegelondon/gsvgd
Code for "Grassmann Stein Variational Gradient Descent" (AISTATS 2022)
https://github.com/lcsrodriguez/optimalhft
HFT & Stochastic control numerical implementations from "Optimal high frequency trading with limit and market orders" (GUILBAUD & PHAM)
https://github.com/erictleung/rosalind
:traffic_light: Programming Solutions to Bioinformatic Rosalind Problems
https://github.com/erictleung/ml-portfolio
:book: Experiment with various machine learning algorithms on various data sets from the University of California, Irvine (UCI) Machine Learning Repository (http://archive.ics.uci.edu/ml/index.html)
https://github.com/erictleung/gene-fusion-analysis
:stars: Parsing and basic network analysis of fusion genes from the Catalogue of Somatic Mutations in Cancer (COSMIC) database
https://github.com/dimits-ts/disruptive-science-study
Predicting the impact of scientific papers using traditional machine learning models and NLP
https://github.com/dedupeio/simplecosine
:triangular_ruler: simple cosine distance
https://github.com/fgnt/asnsig
ASNSIG – A Signal Generator for Ad-Hoc Acoustic Sensor Networks in Smart Home Environments
https://github.com/fgnt/upb_audio_tagging_2019
UPB system for the Kaggle competition "Freesound Audio Tagging 2019"
https://github.com/fermi-ad/acsys-cli
Command line utility to access Fermilab accelerator data.
https://github.com/hbclab/restingstate
Scripts to preprocess resting state data and extract ROI-ROI correlations and voxel-wise ROI seedmaps
https://github.com/fertiglab/j1798_trial_paper
scripts for the J1798 trial paper
https://github.com/hbclab/jumpstartlearning
Various Resources if you want to learn/work on various projects in the Lab
https://github.com/fertiglab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
https://github.com/hbclab/projectacuteexercise-cognitivecontrol
Data and related summaries and analyses from acute exercise project comparing effects on two cognitive control tasks.
https://github.com/hbclab/repositorylearning
Example repository towards learning/working with git
https://github.com/hwunrow/bayesian-cyclegan
[TNNLS] Bayesian Cycle-Consistent Generative Adversarial Networks via Marginalizing Latent Sampling
https://github.com/fertiglab/mkras-vax
scRNA and TCR analysis, including T-cell expansion assays, from subjects in J1994 manuscript by Huff et al.
https://github.com/hbclab/softwareissues
Issues when running primarily fmriprep/mriqc/xcpengine (primarily on argon)
https://github.com/fertiglab/pdac_atlas
Analysis workflow for all data present in our PDAC Atlas Manuscript titled, "Transfer learning associates CAFs with EMT and inflammation in tumor cells in human tumors and organoid co-culture in pancreatic ductal adenocarcinoma"
https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
https://github.com/jcallinan/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
https://github.com/hbclab/pysurfer
Cortical neuroimaging visualization in Python
https://github.com/hbclab/atlascorr
basic correlations of fMRI data using an atlas
https://github.com/hbclab/miykael.github.io
Repo for my personal page: https://miykael.github.io/
https://github.com/hbclab/eprimedockerfile
Dockerfile to create the environment to run the eprime conversion code in the task repositories
https://github.com/924973292/awesome-aerial-ground-object-re-identification
Awesome-AGReID is a curated collection of the latest methods, datasets, and benchmarks for Aerial–Ground Object Re-Identification (AG-ReID). This field focuses on matching objects, mainly people and vehicles, between aerial drone views and ground cameras—an important task for surveillance and security applications.
https://github.com/hbclab/networkneuroscience
Repository for scripts to run network analyses on neuroimaging data
https://github.com/hbeale/epinano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
https://github.com/jcbayley/vitamin_c
This will be the first official public release of the VItamin code base. VItamin is a python package for producing fast gravitational wave posterior samples.
https://github.com/jchiyah/exploring-mm-in-simmc2
Code and models for the paper 'Exploring Multi-Modal Representations for Ambiguity Detection & Coreference Resolution in the SIMMC 2.0 Challenge' published at AAAI 2022 DSTC10 Workshop
https://github.com/hbpmedical/mip-deployment
Deploy the Medical Informatics Platform
https://github.com/hbpmedical/mip_schema
Open-source Python package to manipulate Common Data Elements Metadata Schema for the Medical Informatics Platform (MIP).
https://github.com/jcj7292/mda-cnn
Paper https://www.sciencedirect.com/science/article/pii/S0045782521007015
https://github.com/jclutch/system-design-primer
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
https://github.com/jcmcnch/global-rrna-univeral-metabarcoding-of-plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
https://github.com/hbpmedical/heatmaply
Interactive Heat Maps for R Using plotly
https://github.com/jcmgray/abeliantensors
A library for Abelian symmetry preserving tensors in Python 3
https://github.com/jcmgray/opt_einsum_samples
Tensor network sample contractions in JSON format for testing opt_einsum.
https://github.com/hbrown18/e3sm
Energy Exascale Earth System Model source code.
https://github.com/hcdenbakker/seqsero
Salmonella serotyping from genome sequencing data
https://github.com/hcdenbakker/clonalframeml
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
ml4gw
Torch utilities for doing machine learning in gravitational wave physics
https://github.com/jcmgray/numpy
The fundamental package for scientific computing with Python.
https://github.com/jcmgray/proggyleg
Cumulative points and other progress plots for the premier league
https://github.com/jcmontesherrera/jcmontesherrera
Config files for my GitHub profile.
https://github.com/jcmontesherrera/coralline-algae-vis-spectra
The VIS-spectra of the Antarctic coralline algae T. antarcticum: Coupling hyperspectral imaging with standard pigment and DNA tools
https://github.com/hcdp/ascdp
American Samoa Climate Data Portal web application
https://github.com/jcmontesherrera/tern-dronescape
General protocols and checklists for drone imagery and point cloud collection used for TERN's Dronescape and Naturescan projects.
https://github.com/jcmontesherrera/jcmh-phd-thesis-notebooks
Notebooks and scripts created during the course of PhD research chapters.
https://github.com/hcdp/hcdp
HCDP application for dissemination and visualizing climate data for the state of Hawai