textile • Science 44%

Nance Lab Data Science in the Biological Sciences GitHub Repository for Modules and Activities

pyvolcano • Science 44%

Volcano plot built over numpy, pandas and matplotlib

tranqu • Science 54%

Tranqu: A one-stop framework for transpilers across multiple quantum programming libraries and formats for quantum circuits.

llama-factory • Science 67%

kagpr • Science 54%

forecasting-india-and-usa-benchmark-indices-using-arima-and-prophet • Science 67%

This repository provides a novel approach about how can we use the ARIMA time series model and a suite of models provided by Prophet library (open-sourced by Facebook) to forecast financial time series data i.e. S&P BSE SENSEX and S&P-500.

rnn-lstm-model • Science 54%

This folder contains the network implementation of LSTM models used to develop AI-based slope safety assessment iOS mobile application.

snorql_examples • Science 44%

etdp-ca1 • Science 67%

This repository contains the code for the models used in "A voltage-based Event-Timing-Dependent Plasticity rule accounts for LTP subthreshold and suprathreshold for dendritic spikes in CA1 pyramidal neurons " Tomko et al. (2023).

metoc-sensors • Science 44%

master-thesis • Science 44%

Function generation from a Sum of Oscillator Signals

taking_note_collection • Science 44%

A demo CollectionBuilder site

computational-radiation-biology-and-oncology • Science 44%

calcula-cadeiras • Science 44%

lidar-based-urban-road-and-sidewalk-detection • Science 44%

runmodelscript • Science 54%

claidentinstaller • Science 44%

Installer scripts for Claident

evcsms-data-collector • Science 44%

pra23suppl • Science 44%

Supplementary materials for just submitted article: Photonic Structures Optimization Using Highly Data-Efficient Deep Learning: Application To Nanofins And Annular Groove Phase Masks

packreview_part2 • Science 67%

openscifinal • Science 57%

csc510grp8 • Science 67%

aqpu • Science 44%

Numerical Simulation of Bell-state creation with aQPU

laughing-octo-engine • Science 44%

perennialcrops-gcb • Science 67%

Code to produce the results in the Global Change Biology paper "Assessing temperature-based adaptation limits to climate change of temperate perennial fruit crops"

clsh-core • Science 67%

feel_project • Science 44%

Code repository for FEEL project

20220113-opesciencetraining • Science 44%

20220113-opensciencetraining • Science 44%

Test repo for Open Science course Codobio

deploy-to-grading • Science 57%

"Deploy-to-Grading" is a toolchain for automated analysis and grading of programming tasks.

visible_area • Science 44%

This script will show the trend of the visible area of a spherical body such as a planet or star as the altitude above its surface increases

hexa_payload_decoder • Science 44%

A tool to automatically decode and translate any TCP hexa payload data form any language to english.

richardson_compound_wildfire • Science 44%

Codes for generating results and figures from Richardson et al., 'Global increase in wildfire potential from compound fire weather and drought'

playsem_serenderer • Science 57%

PlaySEM Sensory Effects Renderer (SER) is a framework for delivering sensory effects such as wind, smell, vibration, and light to heterogeneous systems. It deals with variability in digital multisensory systems (mainly mulsemedia) allowing the use of different devices, SDKs/APIs, and many protocols to communicate with diversified applications.

luck-and-choice • Science 57%

Choice model estimation for "Luck, choice and responsibility — An experimental study of fairness views"

srfd-bayes • Science 44%

[Nature Communications] Tumor fractions deciphered from circulating cell-free DNA methylation for cancer early diagnosis

https://github.com/lczech/ratatosk • Science 13%

Snakemake pipeline for phylogenetic placement of metagenomic sequences

https://github.com/lczech/grenepilot-paper • Science 36%

Scripts and analyses for the GrENE-net pilot dataset

https://github.com/lczech/grenedalf-paper • Science 26%

Code for tests and benchmarks of our paper on grenedalf

https://github.com/lesofger/horse_ascii • Science 26%

https://github.com/lesofger/pizza-palace1 • Science 26%

https://github.com/lesofger/telegram_bot_adb_checker • Science 26%

https://github.com/lesunb/diagnosis • Science 10%

Diagnosis

https://github.com/lesunb/morse_simulation • Science 13%

https://github.com/lesunb/jss-2022-replication-package • Science 10%

Replication package of the paper titled "An Architecture for Mission Coordination of Heterogeneous Robots"

https://github.com/lesunb/ais_bsn • Science 13%

https://github.com/lesunb/bsn_seams24 • Science 23%

Body Sensor Network (BSN): a prototype for exercising dependable adaptation in healthcare domain.

https://github.com/lesunb/bsn_rome_24 • Science 23%

Body Sensor Network (BSN): a prototype for exercising dependable adaptation in healthcare domain.

https://github.com/lesunb/implied_scenarios • Science 13%

Relevant files used for the project 'Characterization of Implied Scenarios as Families of Common Behavior'.

https://github.com/linux-cpp-lisp/e3nn-jax • Science 23%

https://github.com/linux-cpp-lisp/pytorch_geometric • Science 23%

Geometric Deep Learning Extension Library for PyTorch

https://github.com/linux-cpp-lisp/opt_einsum • Science 23%

⚡️Optimizing einsum functions in NumPy, Tensorflow, Dask, and more with contraction order optimization.

https://github.com/linux-cpp-lisp/litmatter • Science 10%

Rapid experimentation and scaling of deep learning models on molecular and crystal graphs.

pyOMA2: A Python module for conducting operational modal analysis • Science 93%

pyOMA2: A Python module for conducting operational modal analysis - Published in JOSS (2025)

tmmax • Science 67%

A fast transfer matrix method written in jax for modelling optical multilayer thin films

bamojax • Science 67%

Bayesian Modelling using Jax

NonSysId: Nonlinear System Identification with Improved Model Term Selection for NARMAX Models • Science 93%

NonSysId: Nonlinear System Identification with Improved Model Term Selection for NARMAX Models - Published in JOSS (2025)

THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool • Science 93%

THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool - Published in JOSS (2025)

phylo2vec • Science 67%

Phylo2Vec: a vector representation for binary trees

PyDrugLogics: A Python Package for Predicting Drug Synergies Using Boolean Models • Science 93%

PyDrugLogics: A Python Package for Predicting Drug Synergies Using Boolean Models - Published in JOSS (2025)

MetaSpread: A cancer growth and metastatic spread simulation program in Python • Science 93%

MetaSpread: A cancer growth and metastatic spread simulation program in Python - Published in JOSS (2025)

mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration • Science 95%

mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration - Published in JOSS (2025)

deepinv • Science 54%

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

mlgidGUI - an annotation program for 2D scattering data • Science 93%

mlgidGUI - an annotation program for 2D scattering data - Published in JOSS (2025)

STON: SofTware for petrOgraphic visualisatioN • Science 87%

STON: SofTware for petrOgraphic visualisatioN - Published in JOSS (2025)

optimeo • Science 67%

OPTIMEO is a package doubled by a web application that helps you optimize your experimental process by generating a Design of Experiment, generating new experiments using Bayesian Optimization (BO), and analyzing the results of your experiments using Machine Learning models.

PathFinder: A Matlab/Octave package for oscillatory integration • Science 93%

PathFinder: A Matlab/Octave package for oscillatory integration - Published in JOSS (2025)

NeuroCAPs — Peer-reviewed • Science 93%

NeuroCAPs: A Python Package for Performing Co-Activation Patterns Analyses on Resting-State and Task-Based fMRI Data - Published in JOSS (2025)

ActiSleep Tracker — Peer-reviewed • Science 93%

ActiSleep Tracker: a Python-based dashboard for adjusting automatic sleep predictions of actigraphy data - Published in JOSS (2025)

HINA — Peer-reviewed • Science 98%

HINA: A Learning Analytics Tool for Heterogenous Interaction Network Analysis in Python - Published in JOSS (2025)

calzone-tool • Science 44%

Evaluating the Calibration of Probabilistic Models

PANKH: An unsteady potential flow solver for hovering airfoils • Science 93%

PANKH: An unsteady potential flow solver for hovering airfoils - Published in JOSS (2025)

elasticipy • Science 49%

A python toolkit to perform common tensor operations in Continuum Mechanics

eitprocessing • Science 44%

Software for electrical impedance tomography data loading, visualization and processing

sata • Science 67%

opensim-creator • Science 49%

A UI for building OpenSim models

PyMetric: A Geometry Informed Array Mathematics Package • Science 87%

PyMetric: A Geometry Informed Array Mathematics Package - Published in JOSS (2026)

SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging • Science 87%

SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging - Published in JOSS (2026)

pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms • Science 87%

pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms - Published in JOSS (2026)

vkcompviz • Science 44%

Vulkan image and data processing framework capable of running a cascade of compute shaders and displaying or storing the result.

constrainthg • Science 67%

General system simulation using constraint hypergraphs

itwinai • Science 44%

Advanced AI workflows for scientific digital twins

hermes-rheo • Science 49%

Python package designed to complement and extend the piblin library, offering a set of transforms tailored for analysis of rheological data

SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery • Science 87%

SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery - Published in JOSS (2026)

torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch • Science 87%

torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)

https://github.com/spectralmatch/spectralmatch • Science 49%

Relative radiometric normalization toolkit for raster mosaics and time series

FAIRmaterials: Ontology Tools with Data FAIRification in Development • Science 87%

FAIRmaterials: Ontology Tools with Data FAIRification in Development - Published in JOSS (2026)

tools4rdf • Science 44%

Collection of tools for working with RDF data

$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices • Science 90%

$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices - Published in JOSS (2026)

aiida-aimall: A Python package for automating workflows for AIMAll software • Science 87%

aiida-aimall: A Python package for automating workflows for AIMAll software - Published in JOSS (2026)

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis • Science 87%

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization • Science 87%

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library • Science 87%

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)

A Python API for OTTER • Science 87%

A Python API for OTTER - Published in JOSS (2026)

c3dr • Science 67%

Read and write C3D motion capture data in R

rydiqule • Science 75%

Rydberg Sensor Interactive Quantum Physics Module

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles • Science 87%

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)

Dyad: a binary-star dynamics and statistics library for Python • Science 87%

Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)

pyfive: A pure-Python HDF5 reader • Science 92%

pyfive: A pure-Python HDF5 reader - Published in JOSS (2026)

r.earthworks • Science 67%

An add-on tool for computational terrain modeling in GRASS