GitHub
spatial-frequency-preferences
An experiment to determine the relationship between spatial frequency and eccentricity in the human early visual cortex.
spezistorage
Spezi module to store information and credentials encrypted at rest
renal_segmentor
An application to segment kidneys from renal MRI data using a convolutional neural network.
jwst-coronagraph-visibility
Visualize approximate pointing constraints for JWST coronagraphs.
mtg-jamendo-dataset
Metadata, scripts and baselines for the MTG-Jamendo dataset
kairos
Analysis of Chronological Patterns from Archaeological Count Data - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/kairos
pydesrap_mms
Reproducible analytical pipeline (RAP) for Python discrete-event simulation (DES) implementing an M/M/s queueing model.
compiler-gym
Reinforcement learning environments for compiler and program optimization tasks
alifedata-phyloinformatics-convert
alifedata-phyloinformatics-conversion helps apply traditional phyloinformatics software to alife standardized data
bentoml
The easiest way to serve AI apps and models - Build Model Inference APIs, Job queues, LLM apps, Multi-model pipelines, and more!
alectryon
A collection of tools for writing technical documents that mix Coq code and prose.
oemetadata
The OEMetadata is an energy metadata standard including a metadata schema, templates, and examples.
cobra
COBRApy is a package for constraint-based modeling of metabolic networks.
arkhe
Tools for cleaning rectangular data - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/arkhe
lextale
The LexTALE-package calculates the % correctAv score for the LexTALE-test, English, German and Dutch versions.
code-release
A repository analyzing the impact of open-source code in machine learning, robotics, and controls research
acces-coexsist
Learning simulation parameters from experimental data, from the micro to the macro, from laptops to clusters.
https://github.com/asdf-format/asdf-standard
Standards document describing ASDF, Advanced Scientific Data Format
clinicadl
Framework for the reproducible processing of neuroimaging data with deep learning methods
faninsar
A fancy InSAR time series library, in a Pythonic, fast, and flexible way.
vmas
VMAS is a vectorized differentiable simulator designed for efficient Multi-Agent Reinforcement Learning benchmarking. It is comprised of a vectorized 2D physics engine written in PyTorch and a set of challenging multi-robot scenarios. Additional scenarios can be implemented through a simple and modular interface.
eradiate
Eradiate: a next-generation radiative transfer model for Earth observation applications
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
cvmfs-venv
Example implementation of getting a Python virtual environment to work with CVMFS LCG views
scenedetect
:movie_camera: Python and OpenCV-based scene cut/transition detection program & library.
publicationclassification
Java package for creating a multi-level classification of scientific publications based on citation links between publications.
pyviko
A web interface & Python tool to design knockouts in viruses with overlapping genes.
pytorch-ignite
High-level library to help with training and evaluating neural networks in PyTorch flexibly and transparently.
@stdlib/random-base-mt19937
A 32-bit Mersenne Twister pseudorandom number generator.
glycowork
Package for processing and analyzing glycans and their role in biology.
aesara
Aesara is a Python library for defining, optimizing, and efficiently evaluating mathematical expressions involving multi-dimensional arrays.
atap_widgets
Python package containing interactive widgets for use in ATAP notebooks
folio
Datasets for Teaching Archaeology and Palaeontology - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/folio
atmospheric-inverse-methods-for-flux-optimization
Functions for optimizing surface fluxes of some tracer to be consistent with atmospheric measurements of that tracer.
hanpo-gem
Draft genome-scale model of Hansenula polymorpha (Ogataea polymorpha; Pichia angusta)
uform
Pocket-Sized Multimodal AI for content understanding and generation across multilingual texts, images, and 🔜 video, up to 5x faster than OpenAI CLIP and LLaVA 🖼️ & 🖋️
openseadragon
An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.
awesome-avd
A curated list of research resources in automated vulnerability detection (AVD)
Containershare
Containershare: Open Source Registry to build, test, deploy with CircleCI - Published in JOSS (2018)
openconcept
OpenConcept: A toolkit for conceptual MDAO of aircraft with unconventional propulsion architectures
inference
Turn any computer or edge device into a command center for your computer vision projects.
subprecisioncontactdetection.jl
A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy.
personaverse
Team StochasticallyYours | Natural Language Processing Project | 2025
stars-simpy-example-docs
STARS Project: Example `simpy` model documentation using JupyterBook, GitHub Pages, and STRESS
pl_curves
Python script for drawing Pareto–Lorenz curves for bacterial abundance data.
3286b92f-4fae-4cc6-a29e-e408bc844542
Learning the Underlying Physics of a Simulation Model of the Ocean's Temperature
vetting
Simple, stand-alone tools for vetting transit signals in Kepler, K2 and TESS data
preciseTAD
preciseTAD: A machine learning framework for precise 3D boundary prediction at base-level resolution
scikit-surgerynditracker
Easy communication with NDI trackers (Polaris Vicra, Spectra, Vega, and Aurora)
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
