GitHub
https://github.com/broadinstitute/isham_wgs
ISHAM fungal whole genome sequencing benchmark project
shortlink-ui-kit
Shortlink service (Microservice example) ⭐️ Star the repo if you like it!
coffea
Basic tools and wrappers for enabling not-too-alien syntax when running columnar Collider HEP analysis.
torch-spatiotemporal
tsl: a PyTorch library for processing spatiotemporal data.
bom_analysis
A framework for performing analysis based on a Bill of Materials (BOM) structure. Creates data storage structure that follows a hierarchical BOM which can be operated on. Developed for STEP Outboard Blankets.
exoplex
DEPRECATED. Please refer to https://github.com/CaymanUnterborn/ExoPlex for the updated project. A self-consistent mineral physics solver for exoplanets.
sifrc
Python implementation of the Fourier Ring Correlation (FRC) to determine image resolution
irl-maxent
Maximum Entropy and Maximum Causal Entropy Inverse Reinforcement Learning Implementation in Python
samap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
cost-of-capital-calculator
A cost of capital and effective tax rate calculator
audioset-convnext-inf
Adapting a ConvNeXt model to audio classification on AudioSet
qcd
Quantum Circuit Designer: A gymnasium-based set of environments for benchmarking reinforcement learning for quantum circuit design.
calcam
Python package of spatial calibration tools for science & engineering camera systems.
rdflib-endpoint
💫 Deploy SPARQL endpoints from RDFLib Graphs to serve RDF files, machine learning models, or any other logic implemented in Python
https://github.com/alleninstitute/all-active-workflow
Creating the code base for All-active Model generation written on top of Bluepyopt
corrupted-text
A python library to generate out-of-distribution text datasets. Specifically, the library applies model-independent, commonplace corruptions (not model-specific, worst-case adversarial corruptions). We thus aim to allow benchmark-studies regarding robustness against realistic outliers.
https://github.com/broadinstitute/celligner_ms
Code related to the Celligner manuscript
ragtag
Tools for fast and flexible genome assembly scaffolding and improvement
educarencomunidad.tech
Versión en español de Enseñar Tecnología en Comunidad (Teaching Tech Together)
aeolus-ocean
An all-weather, day-and-night, collision avoidance simulator that can be implemented as a digital twin for the autonomous COLREG-compliant navigation of maritime vessels.
rho-diffusion
Parameterizing n-dimensional density fields using denoising diffusion probabilistic models
pymsaviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - Published in JOSS (2016)
ee-cptcity
ee-cptcity is a module for Google Earth Engine where you can find multiple colour palettes of different themes related to cartography, technical illustration and design. Currently ee-cptcity module has more 300 of color palettes available for the users.
gym-marl-reconnaissance
Gym environment for cooperative multi-agent reinforcement learning in heterogeneous robot teams
openqa-eval
ACL 2023: Evaluating Open-Domain Question Answering in the Era of Large Language Models
apertium-fin-eng
Apertium bilingual lexical data for Finnish–English machine translation
octave-tutorial
Octave programming tutorial based on SW carpentry's Programming with MATLAB
turn_by_turn
I/O functionality for turn-by-turn BPM measurements data from different particle accelerators
https://github.com/drorlab/pensa
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
ml-keyframer
Keyframer: Empowering Animation Design Using Large Language Models
knowgo-vehicle-simulator
An interactive multi-platform Connected Car simulator for generating and streaming realistic vehicle telemetry.
yeast-in-microstructures-dataset
Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].
r-genomics-in-development
Development repo for a revamp of the Data Carpentry R genomics lessons
pyempatica
Python wrapper for Empatica TCP client, allowing bidirectional communication with an Empatica E4.
https://github.com/biocomputingup/cafa-evaluator
A Python Tool for Benchmarking Ontological Classification Methods
learnenvirodiy
A tutorial for learning how to program an Arduino-framework micro-controller to become an environmental data logger.
https://github.com/astropy/astropy-v2.0-paper
Repository for the second Astropy paper
