GitHub
swiftpackagetemplate
A Template Repository for a Swift Package-based Stanford Byers Center for Biodesign Digital Health Project
viralmetagenome
Detect iSNV and construct whole viral genomes from metagenomic samples
fair-workflow
💐 A library to describe workflow written in python using semantic technologies.
sos-sdp_maxsat
Computing SOS-SDP based founds for the maximum-satisfiability problem
datagen-sngw-genrel
Dataset generator of strain time series containing LIGO-Virgo noise plus CCSN general relativistic GW signals.
smcc-2023
Beginner-Intermediate CTF designed for the military students and pupils from Sibiu, Romania 🇷🇴
roi-approaches-in-har
Code for HAR paper 'Comparative Analysis of Adaptive ROI Approaches in Human Action Recognition'
protein-structure-proximity-network
Generates a proximity network out of a protein PDB structure
simugmrt
The repository contains code to simulate uv data using CASA simutil tools for uGMRT observations
synthetic-paper-generator
generating synthetic scientific articles in LaTeX using PyLaTeX, rendering them to PDF, and testing OCR/parsing tools in a controlled way.
pmv-ads-2024-1-e1-proj-web-t10-pmv-ads-2024-1-e1-proj-iot-unity
pmv-ads-2024-1-e1-proj-web-t10-pmv-ads-2024-1-e1-proj-iot-unity created by GitHub Classroom
multiplex_limit.jl
Code for the paper "Inference for decorated graphs and application to multiplex networks" (Dufour and Olhede 2024)
streamad
Online anomaly detection for data streams/ Real-time anomaly detection for time series data.
text-fallstudie-1
QUADRIGA OER: Fallstudie 1 - Text: Quantitative Analyse der Medienwellen der Spanischen Grippe (1918/19)
scenario-vetting-criteria
Definitions of vetting criteria for integrated assessment modelling scenarios
g.e.v.i.r
This repository is a companion to the research paper *Using Text Embeddings for Deductive Qualitative Research at Scale in Physics Education*, by Tor Ole Odden, Halvor Tyseng, Jonas Timmann Mjaaland, Markus Fleten Kreutzer, and Anders Malthe-Sørenssen at the University of Oslo, Norway.
location-prediction-on-twitter-using-machine-learning-techniques
This project applies machine learning techniques to predict the geographical location of Twitter users based on tweet content and metadata. It leverages natural language processing and classification models to estimate user locations with improved accuracy. Ask ChatGPT
nf-crispr-primer-design
Nextflow pipeline for primer design for sequencing CRISPR target sites
tequila_be_mini_backup
A High-Level Abstraction Framework for Quantum Algorithms
https://github.com/argilla-io/argilla-server
A Python native FastAPI server for the Argilla backend.
array_wah
MATLAB tool for evaluating microphone array configurations via 3D localisation metrics. Generates error heatmaps and statistical insights to guide array design in acoustic research.
pyloric-network-simulator
Pure-Python, JAX-accelerate implementation of the pyloric circuit model described by Prinz et al (Nat. Neurosci., 2004)
https://github.com/dmetivie/periodichiddenmarkovmodels.jl
Non-homogenous Hidden Markov Models
pyrit
The Python Risk Identification Tool for generative AI (PyRIT) is an open source framework built to empower security professionals and engineers to proactively identify risks in generative AI systems.
avtandil-programming-language
Esoteric programming language adopted to Digital Humanities tasks. Python implementation. 🤖
https://github.com/brainlesion/preprocessing
preprocessing tools for multi-modal 3D brain imaging
https://github.com/dmetivie/pluto_export
Static export of my pluto notebooks and where I store other materials
https://github.com/broadinstitute/seqc_multiqc
Fork of MultiQC from July 2018 for seQuoia bacterial genomics infrastructure.
https://github.com/byuignite/hips
Hierarchical Parcel Swapping turbulence mixing model
https://github.com/caltechlibrary/2020-cpa-shell-git
Workshop website for January 2020 CPA Shell and Git Classes
full-stack-project-acolhe-queer-application
This Full Stack project was developed by my classmates and me as the semester conclusion project at the Puc Minas University. It was developed with C#, HTML, CSS, Java Script and Bootstrap.
control-neuralode
Neural ODEs as Feedback Policies for Nonlinear Optimal Control (IFAC 2023) https://doi.org/10.1016/j.ifacol.2023.10.1248
datafest-quarto
Workshop materials for learning how to build websites with Quarto
https://github.com/camilogarciabotero/bioatomscount.jl
Count organic atoms in a BioSequence
exaca
Mirror for ExaCA https://github.com/LLNL/ExaCA: cellular automata for alloy nucleation and solidification written with Kokkos
tgt_realtime
Code for real-time processing of shipboard instruments on the R/V Thomas G. Thompson.
https://github.com/dmetivie/abcmethods.jl
A Julia package implementing some Bayesian ABC methods
visualizations_in_r
Introductory lesson on Visualizations in R, built with Carpentries Workbench infracture