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Open Source Science

Scientific Software
Updated 9 months ago

TipToft — Peer-reviewed • Rank 8.3 • Science 100%

TipToft: detecting plasmids contained in uncorrected long read sequencing data - Published in JOSS (2019)

Biology
Scientific Software · Peer-reviewed
Scientific Software
Updated 9 months ago

Multilocus sequence typing by blast from de novo assemblies against PubMLST — Peer-reviewed • Rank 6.1 • Science 100%

Multilocus sequence typing by blast from de novo assemblies against PubMLST - Published in JOSS (2016)

Scientific Software · Peer-reviewed
Updated 9 months ago

nf-uno • Science 57%

metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples

Updated 9 months ago

pops-core • Science 75%

PoPS Core: C++ library for the Pest or Pathogen Spread Model

Updated 9 months ago

amr • Science 75%

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.