Scientific Software
Updated 9 months ago

Multilocus sequence typing by blast from de novo assemblies against PubMLST — Peer-reviewed • Rank 6.1 • Science 100%

Multilocus sequence typing by blast from de novo assemblies against PubMLST - Published in JOSS (2016)

Updated 9 months ago

biocommons.seqrepo • Rank 18.1 • Science 67%

non-redundant, compressed, journalled, file-based storage for biological sequences

Updated 9 months ago

genbankpy • Rank 1.8 • Science 67%

Tools to download, parse and filter GenBank files

Updated 9 months ago

best • Rank 6.6 • Science 44%

Bam Error Stats Tool (best): analysis of error types in aligned reads.

Updated 9 months ago

pyigmap • Science 67%

[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences

Updated 9 months ago

assemblebac • Science 67%

avantonder/assembleBAC is a bioinformatics best-practise analysis pipeline for assembling and annotating bacterial genomes.

Updated 9 months ago

tnpb • Science 57%

Snakemake workflows for TAM depletion analysis and de novo IS605 annotation

Updated 9 months ago

covid-19-signal • Science 67%

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Updated 9 months ago

catch • Science 75%

A package for designing compact and comprehensive capture probe sets.

Updated 9 months ago

sammyseq • Science 67%

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.