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pyskani
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
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pyfastani
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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sotb-wrapper
This repo shows how to use SEISCOPE optimization toolbox Fortran code from Python
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pico_tree
A C++ header only library for fast nearest neighbor and range searches using a KdTree. It supports interfacing with Eigen, OpenCV, and custom data types and provides optional Python bindings.