matchms - processing and similarity evaluation of mass spectrometry data. — Peer-reviewed • Rank 21.8 • Science 98%

matchms - processing and similarity evaluation of mass spectrometry data. - Published in JOSS (2020)

pyam — Peer-reviewed • Rank 19.7 • Science 100%

pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems - Published in JOSS (2019)

fractopo — Peer-reviewed • Rank 12.3 • Science 100%

fractopo: A Python package for fracture network analysis - Published in JOSS (2023)

idf-analysis — Peer-reviewed • Rank 10.4 • Science 98%

idf-analysis: Heavy rainfall intensity as a function of duration and return period - Published in JOSS (2025)

ytree — Peer-reviewed • Rank 10.0 • Science 98%

ytree: A Python package for analyzing merger trees - Published in JOSS (2019)

PII-Codex — Peer-reviewed • Rank 8.6 • Science 98%

PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)

multiqc • Rank 24.6 • Science 77%

Aggregate results from bioinformatics analyses across many samples into a single report.

py-uproot • Rank 22.5 • Science 77%

ROOT I/O in pure Python and NumPy.

cpg • Rank 12.8 • Science 85%

A library to extract Code Property Graphs from C/C++, Java, Go, Python, Ruby and every other language through LLVM-IR.

particle • Rank 20.7 • Science 77%

Package to deal with particles, the PDG particle data table, PDGIDs, etc.

pastas • Rank 17.3 • Science 77%

Pastas is an open-source Python framework for the analysis of groundwater time series.

andes • Rank 16.6 • Science 77%

Python toolbox / library for power system transient dynamics simulation with symbolic modeling and numerical analysis 🔥

decaylanguage • Rank 14.6 • Science 77%

Package to parse decay files, describe and convert particle decays between digital representations.

yt_astro_analysis • Rank 13.7 • Science 77%

yt astrophysical analysis modules

lindemann • Rank 9.1 • Science 77%

lindemann is a python package to calculate the Lindemann index of a lammps trajectory

ekpmeasure • Rank 7.4 • Science 77%

Repository of analysis and computer control code for various experiments. Analysis module is designed to help the researcher wrangle large amounts of meta data

scenedetect • Rank 25.8 • Science 54%

:movie_camera: Python and OpenCV-based scene cut/transition detection program & library.

pandapower • Rank 23.5 • Science 54%

Convenient Power System Modelling and Analysis based on PYPOWER and pandas

ltbams • Rank 10.3 • Science 67%

Power system generation scheduling and co-simulation with dynamics.

yt • Rank 22.4 • Science 54%

Main yt repository

cloupy • Rank 6.7 • Science 67%

CLOUPY IS NO LONGER SUPPORTED. PLEASE, SEE README. cloupy is a Python library for climatological data downloading, processing and visualizing. The main goal of the library is to help its author in writing a BA thesis. The library is well adapted to academic work - used data sources are reliable and graphs are easy to modify.

yuview • Rank 11.3 • Science 62%

The Free and Open Source Cross Platform YUV Viewer with an advanced analytics toolset

xpressplot • Rank 4.7 • Science 67%

A toolkit for navigating and analyzing gene expression datasets

genometric.mspc.core • Rank 14.9 • Science 54%

Using combined evidence from replicates to evaluate ChIP-seq peaks

ccbs-study-3 • Rank 0.7 • Science 67%

Does Adolescent and Adult Training Impact Canine Behavior Outcomes?

omorfi • Rank 7.3 • Science 54%

Open morphology for Finnish

pyfe3d • Rank 3.4 • Science 57%

Finite elements for 3D problems in Python/Cython

lpa-output • Rank 5.5 • Science 54%

Line profile analysis output analyser.

ueqplusanalyze • Rank 5.2 • Science 54%

UEQ+ Data Analyzer based on the given Tool from https://ueqplus.ueq-research.org/

sns • Rank 4.2 • Science 54%

Analysis pipelines for genomic sequencing data

OrbitalTrajectories • Rank 6.5 • Science 51%

OrbitalTrajectories.jl is a modern orbital trajectory design, optimisation, and analysis library for Julia, providing methods and tools for designing spacecraft orbits and transfers via high-performance simulations of astrodynamical models.

n2kanalysis • Rank 2.3 • Science 54%

@stdlib/stats-anova1 • Rank 9.9 • Science 44%

Perform a one-way analysis of variance.

multiplier • Rank 9.0 • Science 44%

Code auditing productivity multiplier.

Corpuscles • Rank 8.7 • Science 41%

Julia package for particle physics

solar-and-wind-potentials • Rank 3.8 • Science 41%

Estimation of solar and wind power generation potentials in Europe.

possibility-for-electricity-autarky • Rank 2.4 • Science 41%

Is your European region able to provide itself with 100% renewable electricity?

openscm • Rank 6.6 • Science 28%

Unified access to simple climate models (work in progress)

i2cner • Rank 2.1 • Science 28%

Holds software, notes, documentation, and publications related to the ARFC I2CNER project on dynamic energy systems analysis.

https://github.com/centrefordigitalhumanities/gabber • Science 31%

A project for the Data School.

ramanspec_basicoperations • Science 67%

Procedures (for IgorPro) to perform operations needed in day to day analysis of spectroscopic data. For example, Raman or infrared spectra where the data is structured as array of 1-D or 2-D waves.

pagerank-openmp-dynamic • Science 67%

Design of OpenMP-based Parallel Dynamic PageRank algorithm for measuring importance.

snap-data.sh • Science 54%

CLI for SNAP dataset, which is a collection of more than 50 large networks.

watervogelanalysis • Science 44%

ziggy • Science 54%

Ziggy, a portable, scalable infrastructure for science data processing pipelines, is the child of the Transiting Exoplanet Survey Satellite (TESS) pipeline and the grandchild of the Kepler Pipeline.

2021-10-11-stonybrook-online • Science 18%

Data Carpentry: Ecology with Python

rrlab • Science 44%

The RRLab R package is a growing collection of experimental techniques and quality-of-life tools born from years of hands-on data science, modeling, and exploration. Built as a personal lab bench in R, it reflects a constant search for better ways to understand high-dimensional data, test bold ideas, and streamline the grind of daily analysis.

1000-tools-paper • Science 67%

Code and analysis for the 1000 tools paper

emr • Science 31%

Music and Science: A Guide to Empirical Research (Routledge Book)

damagedlogginganalyzer • Science 44%

A project about an analyzation of a statistic of damaged logging (wood) in Germany using Python.

ConservationLawsParticles • Science 67%

Particle methods for 1D conservation laws

abvanalysis • Science 44%

chmap • Science 67%

A python package focused on the detection, mapping, tracking, and general analysis of coronal holes in the solar corona.

fragterminomics • Science 44%

Annotation and processing of peptides from FragPipe search results

instantaneous-center-method-for-diaphragms • Science 44%

Inelastic analysis method for steel diaphragms using the instantaneous center method

analysis-dlr-se-waws • Science 75%

This repository is used to analyze the workshops of the DLR internal workshop series on software engineering.

solar_orbiter_anomalies • Science 44%

Solar Orbiter Data Analysis

fracsuite • Science 67%

A small toolkit for analyzing fracture patterns on glass plys.

clumpedr • Science 67%

Clumped isotope data analysis in R

sysloss • Science 67%

Power tree analysis of circuits, boards and systems.

semantic_kitti_stats • Science 44%

:chart_with_downwards_trend: Get some nice plots with statistics about the Semantic KITTI dataset

tegrom • Science 57%

Temporal graph model on DOM

openqda • Science 67%

Free open collaborative qualitative data analysis software

viroconstrictor • Science 67%

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

empire-analysis • Science 67%

A sustainable literature review for analyzing the state and evolution of empirical research in requirements engineering using KG-EmpiRE.

pagerank-barrierfrees-openmp-dynamic • Science 54%

Design of OpenMP-based statically scheduled Barrier-free Dynamic PageRank algorithm for link analysis.

https://github.com/clinical-genomics/raredisease • Science 31%

CG's rare disease pipeline in next flow, see the main repo here 👇

template-analysis-repo • Science 52%

A template repo for ECHILD analysis projects

ecomp_analysis • Science 67%

Analyses for the eComp experiment 2021

tailoredforming-analysis • Science 67%

An analysis of Tailored Forming Process Chains using the ORKG.

advanced_paper_analyzer • Science 67%

ugabore • Science 67%

Borehole repair data from central Uganda associated with a project report completed by Joseph Lwere for the “data science for openwashdata” course

dhcurve • Science 44%

An R package for automated modelling of diameter-height relations for trees