Collaborative Container Modules with Singularity Registry HPC
Collaborative Container Modules with Singularity Registry HPC - Published in JOSS (2021)
Singularity Compose
Singularity Compose: Orchestration for Singularity Instances - Published in JOSS (2019)
The Experiment Factory
The Experiment Factory: Reproducible Experiment Containers - Published in JOSS (2018)
Singularity Registry
Singularity Registry: Open Source Registry for Singularity Images - Published in JOSS (2017)
Container Tree
Container Tree: Software to Model Container Filesystems, Packages, and Inheritance - Published in JOSS (2019)
compss
COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.
HelpMe Command Line Helper Utility
HelpMe Command Line Helper Utility - Published in JOSS (2018)
tucca-rna-seq
Tufts University Center for Cellular Agriculture's RNA-Seq Workflow for Cellular Agriculture Projects
nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
TwistMethylFlow
A NextFlow pipeline for Twist NGS DNA Methylation data analysis
mpox-seek
A rapid pipeline for targeted and whole-genome ONT monkeypox sequencing
parametric-nn-models
Physics-Informed Neural Network, Finite Element Method enhanced neural network, and FEM data-based neural network