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Open Source Science

Scientific Software
Updated 11 months ago

treemaker — Peer-reviewed • Rank 6.1 • Science 93%

treemaker: A Python tool for constructing a Newick formatted tree from a set of classifications. - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

Phylogemetric — Peer-reviewed • Rank 5.7 • Science 93%

Phylogemetric: A Python library for calculating phylogenetic network metrics - Published in JOSS (2016)

Scientific Software · Peer-reviewed
Updated 11 months ago

RNeXML • Rank 17.8 • Science 59%

Implementing semantically rich NeXML I/O in R

Updated 11 months ago

TreeSearch • Rank 12.5 • Science 59%

R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria

Updated 11 months ago

Quartet • Rank 11.8 • Science 59%

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)

Updated 11 months ago

rogue • Rank 11.1 • Science 59%

Identify rogue taxa in phylogenetic trees within R

Updated 11 months ago

treetools • Rank 5.3 • Science 59%

Create, modify and analyse phylogenetic trees in R

Updated 11 months ago

beautier • Rank 14.6 • Science 49%

R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2

Updated 11 months ago

phangorn • Rank 20.2 • Science 36%

Phylogenetic analysis in R

Updated 11 months ago

phylo.jl • Rank 9.6 • Science 46%

Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl

Updated 11 months ago

babette • Science 49%

babette is an R package to work with BEAST2