Scientific Software
Updated 11 months ago

sourmash v4 — Peer-reviewed • Rank 21.8 • Science 100%

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets - Published in JOSS (2024)

Scientific Software
Updated 11 months ago

VCFPy — Peer-reviewed • Rank 15.9 • Science 93%

VCFPy: a Python 3 library with good support for both reading and writing VCF - Published in JOSS (2016)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

AltamISA — Peer-reviewed • Rank 12.6 • Science 93%

AltamISA: a Python API for ISA-Tab files - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Updated 11 months ago

integron_finder • Rank 6.8 • Science 85%

Bioinformatics tool to find integrons in bacterial genomes

Earth and Environmental Sciences (40%)
Updated 11 months ago

TreeSearch • Rank 12.5 • Science 59%

R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria

Updated 11 months ago

Quartet • Rank 11.8 • Science 59%

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)

Updated 11 months ago

BioCor • Rank 15.4 • Science 54%

Package to calculate functional similarity between genes https://biocor.llrs.dev

Updated 11 months ago

drugfindr • Science 36%

Repository holding the code for the drugfindR R package

Scientific Software
Updated 11 months ago

grepq — Peer-reviewed • Science 98%

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

gtexr — Peer-reviewed • Science 98%

gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 11 months ago

paver • Science 39%

PAVER: Pathway Analysis Visualization with Embedding Representations