matchms - processing and similarity evaluation of mass spectrometry data.
matchms - processing and similarity evaluation of mass spectrometry data. - Published in JOSS (2020)
pyam
pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems - Published in JOSS (2019)
fractopo
fractopo: A Python package for fracture network analysis - Published in JOSS (2023)
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
idf-analysis
idf-analysis: Heavy rainfall intensity as a function of duration and return period - Published in JOSS (2025)
ytree
ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
Reducing the efforts to create reproducible analysis code with FieldTrip
Reducing the efforts to create reproducible analysis code with FieldTrip - Published in JOSS (2024)
PII-Codex
PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
SmartEDA
SmartEDA: An R Package for Automated Exploratory Data Analysis - Published in JOSS (2019)
Cellocity
Cellocity: A Python package for analysis of confluent cell layer dynamics - Published in JOSS (2021)
Asimov
Asimov: A framework for coordinating parameter estimation workflows - Published in JOSS (2023)
Slicer-Liver
Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)
THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool
THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool - Published in JOSS (2025)
qMRLab
qMRLab: Quantitative MRI analysis, under one umbrella - Published in JOSS (2020)
KinOpt: A Python package for chemical kinetics analysis and optimization
KinOpt: A Python package for chemical kinetics analysis and optimization - Published in JOSS (2026)