Projects

Updated 10 months ago

cobrexa.jl • Rank 6.5 • Science 57%

Constraint-Based Reconstruction and EXascale Analysis

cobra constraint-based-modeling exascale exascale-analysis high-performance hpc julia

Updated 10 months ago

ssbio • Rank 11.1 • Science 10%

A Python framework for structural systems biology

cobrapy constraint-based-modeling protein-structure structural-biology structural-systems-biology systems-biology

Updated 10 months ago

https://github.com/biosimulators/biosimulators_cobrapy • Rank 9.1 • Science 10%

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biochemical-networks biosimulators cobrapy combine-archive computational-biology constraint-based-modeling docker fba flux-balance-analysis omex-metadata python sbml sed-ml simulation systems-biology

Updated 10 months ago

COBREXA • Science 57%

COnstraint Based Reconstruction and EXascale Analysis (in Julia)

cobra constraint-based-modeling high-performance-computing hpc julia metabolic-engineering metabolic-models sbml sbml-simulation

Updated 10 months ago

vffva • Science 67%

Dynamically load-balanced FVA through a hybrid MPI/OpenMP architecture.

constraint-based-modeling flux-balance-analysis metabolic-models

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

cobrexa.jl • Rank 6.5 • Science 57%

ssbio • Rank 11.1 • Science 10%

https://github.com/biosimulators/biosimulators_cobrapy • Rank 9.1 • Science 10%

COBREXA • Science 57%

vffva • Science 67%