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Mathematics (40%)

containers desktop docker gpu gui html5 nerdctl podman printer pulseaudio sandbox sound ssh vnc wayland webcam x x11 xorg xpra

Computer Science (39%)

bids bids-apps bidsapp brain chuv connectome dmri docker eeg fmri parcellation pipelines python singularity

Mathematics Sociology Economics

ai-platform docker google-cloud python3 research-tool

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deep-learning docker nlp python

angular docker python qualitative-analysis qualitative-research text-labeling thematic-analysis

Computer Science (40%)

ccl cloud connected-components-labeling connectomics docker downsample downsampling kubernetes meshing multi-resolution neuroglancer python python3 skeletonization visualization volumetric-data

automl clinical-decision-support computer-vision deep-learning docker explainable-ai framework healthcare-imaging image-classification medical-image-analysis medical-image-classification pip python research tensorflow

aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine

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Artificial Intelligence and Machine Learning

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docker ros

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conda docker pytest python satay transposon yeast

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Engineering (40%)

asyncio aws data-analysis docker hdf5 multi-dimensional python scientific-data

containers docker hpc repo2docker sherlock

agents classification computer-vision deployment docker inference inference-api inference-server instance-segmentation jetson machine-learning object-detection onnx python tensorrt vit yolo11 yolov12 yolov5 yolov8

application bioinformatics cloud containers docker executor ga4gh hpc scala wdl workflow workflow-description-language workflow-execution

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cpp docker tensorflow

c distributed-computing docker hpc java pipeline-framework python singularity slurm workflow-management-system workflows

docker docker-compose go golang orchestration

build cuda deep-learning deep-learning-tutorial docker docker-compose machine-learning makefile mlops mlops-template python pytorch source source-python template template-repository wheel

docker

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docker docker-engine-api docker-swarm python python-library

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docker github-actions gitlab-ci ros

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docker pytorch ros ros2 tensorflow

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docker end-to-end-machine-learning nuclear supervised-learning

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bioinformatics docker openbabel pdb plip protein-structure python-bindings scientific-computing singularity

biological-networks docker jupyter-notebook model-analysis systems-biology

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docker entrypoint executable guts path

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docker software-carpentry training

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api docker huggingface-transformers keytotext keywords nlp sentences streamlit t5

docker jupyter jupyterhub

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docker geographic-data-science jupyter-lab latex python r

containers docker dockerfiles jetson machine-learning numpy nvidia pandas pytorch ros-containers ros2-foxy scikit-learn tensorflow

Earth and Environmental Sciences (40%) Biology (40%)

computer-vision docker emotion-recognition python pytorch sentiment-analysis speech-processing speech-to-text

ai containers cuda deep-learning docker machine-learning pytorch tensorflow

docker reproducibility rstats

docker embed flask memento social-cards surrogate thumbnails web-archives

analytics big-data containers data-analysis data-science distributed-systems docker go kubernetes pachyderm

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aws-batch batch-processing cloud-computing covalent docker elastic-container-registry etl parallelization pipelines python python3 workflow

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docker golang kubernetes metrics monitoring prometheus slo thanos time-series

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3d-face-reconstruction docker

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bash blogging cli docker docker-compose ghost ghost-cms gitlab integration jamstack nginx nodejs publishing scraping-tool self-hosted static-site-generator web-scraper wget workflow

biochemical-networks biosimulators combine-archive computational-biology copasi docker dynamical-modeling omex-metadata python sbml sed-ml simulation systems-biology

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blob devcontainer docker processing

alpine-linux docker ruby

alpine-linux docker

browser-automation docker fastapi k3s kubernetes mcp-server pydantic selenium selenium-grid webscraping work-in-progress

Engineering

blob devcontainer docker unity unity3d

ai bash cli container docker docker-compose exl2 gguf llm local mcp npm package pypi safetensors self-hosted tool tools

azure bioinformatics conda docker genbank genetics liftoff metadata mpox ncbi nextflow nf-tower pipeline python rna-seq scicomp sequencing singularity sra vadr

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automation-engine cli containers devops docker podman reproducibility sciops singularity workflows

docker machine-learning pandas python36 scikit-learn simpleitk

autosubmit climate docker hydrology model workflow

deception docker elk honeypot network-security security t-pot

bash docker matrix pipeline processing python workflow yaml

biochemical-networks biosimulators cellml combine-archive computational-biology docker mathematical-modelling omex-metadata research sbml sed-ml simulation simulator systems-biology

control docker fishing fishing-vessels kotlin monitoring openlayers postgis prefect react

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cromwell docker ide lsp theia vscode wdl wdl-devtools

docker reproducible-research rstats

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bookstore docker grpc microservices microservices-architecture