Projects

Scientific Software

Updated 10 months ago

BASICO — Peer-reviewed • Rank 13.1 • Science 100%

BASICO: A simplified Python interface to COPASI - Published in JOSS (2023)

copasi python

Engineering (40%)

Scientific Software · Peer-reviewed

Updated 10 months ago

https://github.com/biosimulators/biosimulators_copasi • Rank 10.8 • Science 36%

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biochemical-networks biosimulators combine-archive computational-biology copasi docker dynamical-modeling omex-metadata python sbml sed-ml simulation systems-biology

Updated 10 months ago

https://github.com/copasi/python-petab-importer • Rank 7.3 • Science 36%

PEtab --> COPASI importer

copasi petab python

Updated 10 months ago

pycotools • Rank 8.0 • Science 23%

A Python Toolbox for COPASI

copasi modelling-biological-systems ode parameter-estimation systems-biology

Updated 10 months ago

https://github.com/charlesrocabert/metevolsim • Rank 6.4 • Science 13%

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

biochemical-networks copasi evolution metabolic-abundances metabolic-network metabolome sbml simulation systems-biology

Updated 10 months ago

https://github.com/copasi/copasi-dependencies • Science 26%

Collection of OpenSource libraries to simplify COPASI build

cmake combine copasi mml-widget numl qwt sbml sedml

Updated 10 months ago

https://github.com/copasi/python-copasi-testsuite • Science 26%

Python COPASI testing

copasi python testing-tools

Updated 10 months ago

si_pritchard_birch_2014 • Science 13%

Supplementary information/data for Pritchard & Birch (2014) doi:10.1111/mpp.12210

biological-simulations copasi plant-microbe-interactions reproducible-paper reproducible-research

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

BASICO — Peer-reviewed • Rank 13.1 • Science 100%

https://github.com/biosimulators/biosimulators_copasi • Rank 10.8 • Science 36%

https://github.com/copasi/python-petab-importer • Rank 7.3 • Science 36%

pycotools • Rank 8.0 • Science 23%

https://github.com/charlesrocabert/metevolsim • Rank 6.4 • Science 13%

https://github.com/copasi/copasi-dependencies • Science 26%

https://github.com/copasi/python-copasi-testsuite • Science 26%

si_pritchard_birch_2014 • Science 13%