flowkit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
flowio
A Python library for reading and writing Flow Cytometry Standard (FCS) files
flowutils
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
https://github.com/armbrustlab/cytdiv
cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880