eo-tides
eo-tides: Tide modelling tools for large-scale satellite Earth observation analysis - Published in JOSS (2025)
scores
scores: A Python package for verifying and evaluating models and predictions with xarray - Published in JOSS (2024)
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust - Published in JOSS (2024)
oce
oce: an R package for Oceanographic Analysis - Published in JOSS (2022)
OceanBioME.jl
OceanBioME.jl: A flexible environment for modelling the coupled interactions between ocean biogeochemistry and physics - Published in JOSS (2023)
argopy
argopy: A Python library for Argo ocean data analysis - Published in JOSS (2020)
Clouddrift
Clouddrift: a Python package to accelerate the use of Lagrangian data for atmospheric, oceanic, and climate sciences - Published in JOSS (2024)
AIBECS.jl
AIBECS.jl: A tool for exploring global marine biogeochemical cycles. - Published in JOSS (2022)
cgeniepy
cgeniepy: A Python package for analysing cGENIE Earth System Model output - Published in JOSS (2024)
xinvert
xinvert: A Python package for inversion problems in geophysical fluid dynamics - Published in JOSS (2023)
pycoxmunk
pycoxmunk: A python package for computing sea surface reflectance - Published in JOSS (2023)
NCDatasets.jl
NCDatasets.jl: a Julia package for manipulating netCDF data sets - Published in JOSS (2024)
exchange
Description of the WHP (CCHDO) Exchange Format for CTD/Hydrographic Data
iris
A powerful, format-agnostic, and community-driven Python package for analysing and visualising Earth science data
3286b92f-4fae-4cc6-a29e-e408bc844542
Learning the Underlying Physics of a Simulation Model of the Ocean's Temperature
DIVAnd
DIVAnd performs an n-dimensional variational analysis of arbitrarily located observations
the-next-decade-of-seismic-oceanography
This repository contains supporting information for the article The Next Decade of Seismic Oceanography: Possibilities, Challenges and Solutions (doi: 10.3389/fmars.2022.736693)
OceanSpy
OceanSpy: A Python package to facilitate ocean model data analysis and visualization - Published in JOSS (2019)
multi-mode-cnn-pytorch
A PyTorch implementation of the Multi-Mode CNN to reconstruct Chlorophyll-a time series in the global ocean from oceanic and atmospheric physical drivers
stoqs
Geospatial database visualization software for oceanographic measurement data
b34facfa-cea8-48f5-89f6-f11ce00812a9
Showcasing a deep learning model for detecting floating objects
docs
Documentation about the UBC-MOAD SalishSeaCast project. Part of the MEOPAR network of centres of excellence.
sog-bloomcast-ensemble
Successor to the SoG-bloomcast project that uses an ensemble forecast.
so-fronts
Full scripts to generate figures for "Defining Southern Ocean fronts using unsupervised classification" https://doi.org/10.5194/os-17-1545-2021
awesome-lwms
A Collection of Awesome Large Weather Models (LWMs) | AI for Earth (AI4Earth) | AI for Science (AI4Science)
bluecloud-plankton
Spatial interpolation of plankton data using a neural network
storm-surge
Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V. (2015). Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean, 54: 1-21 (2016).
SalishSeaNowcast
Python package associated with running the SalishSeaCast NEMO and other ocean models in near-real-time to produce daily nowcasts/forecasts
gsw-r
R implementation of the Thermodynamic Equation Of Seawater - 2010 (TEOS-10)
https://github.com/argocanada/bgcargodmqc
python package for performing DMQC on BGC-Argo data
2020-10-26-whoi-data
4 half days online workshops for WHOI staff, data management and python
https://github.com/amnh/hackthedeep
The 4th Annual American Museum of Natural History Hackathon produced by the BridgeUP: STEM program
https://github.com/armbrustlab/cytdiv
cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880
https://github.com/callumrollo/adcp-glider
Work in progress! Process data from Seaglider 1MHz Nortek AD2CP
marex
Marine Extremes detection, identification, and tracking/merging for Exascale Climate data
irfcb
I 'R' FlowCytobot (iRfcb): Tools for Analyzing and Processing Data from the IFCB
sandi
Sediment ANalysis and Delineation through Images. A free and open-source software to process particles from high-resolution underwater images and to analyze gravels from laboratory images. Designed for contour detection, shape characterization and size measurement. SANDI is intended to become a collaborative project.
ocean-data-map-project
The Ocean Navigator is an online tool that is used to help visualise scientific research data. a users guide is available at https://dfo-ocean-navigator.github.io/Ocean-Navigator-Manual/ and the tool is live at
sog-code-collab
1-D Biophysical Coupled Near-surface Mixing Model of the Strait of Georgia
https://github.com/dankelley/oceananalysis.jl
Julia code for oceanographic analysis
counting-ocean-particles
A set of easy codes to process data on marine suspended particles collected with different sensors
39d9c177-11da-41b2-9b64-63f4c1c834b3
Variational data assimilation with deep prior
sog-bloomcast
Superseded by https://github.com/SalishSeaCast/SOG-Bloomcast-Ensemble. SoG-bloomcast is a an operational oceanography project to provide daily updated forecasts of the first spring phytoplankton bloom in the Strait of Georgia on the British Columbia south coast. In addition to being part of an active research program on the physics and biogeochemistry of the Salish Sea, SoG-bloomcast is intended as a demonstration of how small university research groups can use lightweight software automation to publish near-real-time model results to the web. SoG-bloomcast uses the SOG coupled physics-biogeochemical model for deep estuaries to do its science.
ocean_data_tools
ocean_data_tools: A MATLAB toolbox for interacting with bulk freely-available oceanographic data - Published in JOSS (2020)