https://github.com/biopragmatics/pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
sweet
Official repository for Semantic Web for Earth and Environmental Terminology (SWEET) Ontologies
plc2skill
PLC2Skill is an automated method to generate skill models in the form of an ontology from existing PLC code.
https://github.com/biopragmatics/obo-db-ingest
🗄️ Conversion of biomedical nomenclatures like HGNC to OBO
orthogene
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
https://github.com/cthoyt/onto2nx
Converts OWL ontologies and OBO to NetworkX Graphs
https://github.com/cthoyt/ols-client
🎡 Unified access to OLS instances like from the EBI and TIB
https://github.com/bayer-group/cmc-ontologies
This is a submodule of cmc-knowledge-graph-setup. It contains ontologies and relevant data graph files
https://github.com/cthoyt/ontoportal-client
🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal
https://github.com/clariah/awesome-humanities-ontologies
A curated list of ontologies for Digital Humanities
llm-change-agent
LLM Change Agent is a command-line interface (CLI) tool designed to interact with various language models for generating and modifying ontology definitions. It offers a range of functionalities to streamline KGCL command generation tasks.
https://github.com/cidgoh/cancogen_contextual_data_specification
A data specification for harmonizing One Health Canadian COVID pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a the DataHarmonizer, supported by field and reference guides as well as different curation and new term request SOPs.
https://github.com/cidgoh/grdi_amr_one_health
A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
https://github.com/cthoyt/ssslm
A simple standard for sharing literal mappings (SSSLM)
https://github.com/cbib/linda
Web application for managing experimental and environmental metadata for plant experiments
ontology
This repository contains the crisis management ontology for the beAWARE H2020 project along with the relevant documentation.
ontology-elements
Ontology-Elements project aims at developing custom ontology rich html elements (web components). The primary benefit of custom html elements is that they can be used with any framework, or even without a framework. This makes them ideal for distributing components where the end consumer may not be using the same frontend stack
ontolearner
OntoLearner: A Modular Python Library for Ontology Learning with LLMs https://pypi.org/project/OntoLearner/
https://github.com/cthoyt/cthoyt.github.io
My personal website, served at https://cthoyt.com
edam-browser
Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies
smog
Spreadsheet Model Generator (SMOG): A Lightweight Tool for Object-Spreadsheet Mapping
