Scientific Software
Updated 6 months ago

htmldate — Peer-reviewed • Rank 23.6 • Science 95%

htmldate: A Python package to extract publication dates from web pages - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

Generating CodeMeta Metadata for R Packages — Peer-reviewed • Rank 19.6 • Science 95%

Generating CodeMeta Metadata for R Packages - Published in JOSS (2017)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PET2BIDS — Peer-reviewed • Rank 12.4 • Science 100%

PET2BIDS: a library for converting Positron Emission Tomography data to BIDS - Published in JOSS (2024)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

cffr — Peer-reviewed • Rank 13.3 • Science 98%

cffr: Generate Citation File Format Metadata for R Packages - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

cfdm — Peer-reviewed • Rank 12.7 • Science 98%

cfdm: A Python reference implementation of the CF data model - Published in JOSS (2020)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Metasyn — Peer-reviewed • Rank 9.7 • Science 98%

Metasyn: Transparent Generation of Synthetic Tabular Data with Privacy Guarantees - Published in JOSS (2025)

Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Updated 6 months ago

ck • Rank 19.4 • Science 77%

Collective Knowledge (CK), Collective Mind (CM/CMX) and MLPerf automations: community-driven projects to facilitate collaborative and reproducible research and to learn how to run AI, ML, and other emerging workloads more efficiently and cost-effectively across diverse models, datasets, software, and hardware using MLPerf methodology and benchmarks

Updated 6 months ago

widoco • Rank 9.8 • Science 77%

Wizard for documenting ontologies. WIDOCO is a step by step generator of HTML templates with the documentation of your ontology. It uses the LODE environment to create part of the template.

Updated 6 months ago

cf-xarray • Rank 21.2 • Science 64%

an accessor for xarray objects that interprets CF attributes

Updated 6 months ago

somef • Rank 8.2 • Science 77%

SOftware Metadata Extraction Framework: A tool for automatically extracting relevant software information from readme files

Updated 6 months ago

micrometaapp-react • Rank 5.9 • Science 77%

This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!

Updated 5 months ago

cf-python • Rank 15.7 • Science 67%

A CF-compliant Earth Science data analysis library

Updated 6 months ago

micrometaapp-omero • Rank 4.5 • Science 77%

This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client

Updated 6 months ago

oemetadata • Rank 13.1 • Science 67%

The OEMetadata is an energy metadata standard including a metadata schema, templates, and examples.

Updated 6 months ago

masmps • Rank 2.9 • Science 77%

Metadata model for machine-actionable Software Management Plans

Updated 6 months ago

qa-catalogue • Rank 8.2 • Science 67%

QA Catalogue – a metadata quality assessment tool for library catalogue records (MARC, PICA, UNIMARC)

Engineering Earth and Environmental Sciences (40%) Materials Science (40%)
Updated 5 months ago

odis-arch • Rank 8.4 • Science 59%

Development of the Ocean Data and Information System (ODIS) architecture

Updated 6 months ago

core-geonetwork • Rank 11.9 • Science 54%

GeoNetwork is a catalog application to manage spatially referenced resources. It provides powerful metadata editing and search functions as well as an interactive web map viewer. It is currently used in numerous Spatial Data Infrastructure initiatives across the world.

Updated 6 months ago

nbomicroscopymetadataspecs • Rank 5.8 • Science 59%

The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.

Updated 6 months ago

zowie • Rank 8.7 • Science 54%

Adds Zotero "select" links to attachment files in a Zotero database on macOS, so that outside of Zotero, you can find the bibliographic entry to which a file belongs. (Only works for local storage, not linked attachments.)

Updated 6 months ago

4dnmetadataschemaxsd2jsonconverter • Rank 3.3 • Science 59%

This is a converter written in Java that translates an XSD microscopy metadata schema into JSON

Updated 5 months ago

geonapi • Rank 13.2 • Science 49%

R Interface to GeoNetwork API

Updated 5 months ago

metador-core • Rank 8.1 • Science 54%

Core of Metador, the FAIR metadata-first research data management framework.

Updated 6 months ago

codebook • Rank 12.8 • Science 49%

Cook rmarkdown codebooks from metadata on R data frames

Updated 6 months ago

urial • Rank 5.9 • Science 54%

Urial (URI Addition tooL) intelligently updates URIs stored in Finder comments of macOS files

Updated 5 months ago

py3-us • Rank 22.7 • Science 36%

A package for easily working with US and state metadata

Updated 6 months ago

canada-labour-research-assistant • Rank 3.3 • Science 54%

The Canada Labour Research Assistant (CLaRA) is a privacy-first LLM-powered RAG AI assistant proposing Easily Verifiable Direct Quotations (EVDQ) to mitigate hallucinations in answering questions about Canadian labour laws, standards, and regulations. It works entirely offline and locally, guaranteeing the confidentiality of your conversations.

Updated 6 months ago

py3data • Rank 0.7 • Science 54%

A flexible and lightweight Python interface to the re3data.org database

Updated 6 months ago

FAIRshare • Rank 2.6 • Science 51%

Simplifying the curation and sharing of biomedical research data and software according to applicable FAIR guidelines

Updated 6 months ago

brep-part-finder • Rank 8.5 • Science 44%

A Python package to identify the part ID number in Brep format CAD files

Updated 5 months ago

BiocPkgTools • Rank 16.0 • Science 36%

Computable build reports, package metadata, and download stats from the Bioconductor project

Updated 6 months ago

codemetapy • Rank 9.8 • Science 39%

A Python package for generating and working with codemeta

Updated 5 months ago

scif • Rank 12.5 • Science 36%

scientific filesystem: a filesystem organization for scientific software and metadata

Updated 6 months ago

csv-metadata-quality • Rank 3.4 • Science 44%

A simple but opinionated metadata quality checker and fixer designed to work with CSVs in the DSpace ecosystem

Updated 6 months ago

rcrossref • Rank 20.3 • Science 26%

R client for various CrossRef APIs

Updated 5 months ago

guano • Rank 9.9 • Science 36%

Python reference implementation of the GUANO bat acoustics metadata specification

Updated 5 months ago

PHES-ODM • Rank 6.9 • Science 39%

The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

Updated 5 months ago

https://github.com/biopragmatics/biolookup • Rank 5.3 • Science 36%

🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.

Scientific Software
Updated 6 months ago

NPSdataverse — Peer-reviewed • Rank 4.0 • Science 36%

NPSdataverse: a suite of R packages for data processing, authoring Ecological Metadata Language metadata, checking data-metadata congruence, and accessing data - Published in JOSS (2025)

Updated 5 months ago

metalite.ae • Rank 12.6 • Science 26%

An R package for standard adverse events analysis

Updated 5 months ago

https://github.com/annakrystalli/dataspice-tutorial • Rank 2.5 • Science 36%

Tutorial in practical research data management: creating simple metadata files using dataspice

Updated 5 months ago

readwritesqlite • Rank 11.5 • Science 26%

An R package that enhances writing and reading data to and from SQLite databases

Updated 5 months ago

https://github.com/antarctica/metadata-library • Rank 10.2 • Science 23%

Python library for generating ISO 19115 metadata records.

Updated 5 months ago

pepr • Rank 9.3 • Science 23%

Project metadata manager for PEPs in R

Updated 5 months ago

https://github.com/centrefordigitalhumanities/edpop • Rank 5.8 • Science 26%

A virtual research environment (VRE) that lets you collect, align and annotate bibliographical and biographical records from several online catalogs.

Updated 5 months ago

eml • Rank 8.3 • Science 23%

Ecological Metadata Language (EML)

Updated 5 months ago

metafinder • Rank 14.4 • Science 13%

Search for documents in a domain through Search Engines (Google, Bing and Baidu). The objective is to extract metadata

Updated 5 months ago

https://github.com/annakrystalli/emodnet-dataspice-tutorial • Rank 0.0 • Science 26%

An Introduction to using R package Dataspice to collect metadata for EMODnet Biology Data Products

Updated 5 months ago

https://github.com/cdli-gh/data • Rank 5.9 • Science 10%

This is a copy of the daily dump of catalogue and ATF data from the Cuneiform Digital Library Initiative (http://cdli.ucla.edu)

Updated 6 months ago

runcrate • Science 67%

http://www.researchobject.org/runcrate/

Updated 6 months ago

indegx • Science 67%

RDF rules-based metadata extraction framwork for SPARQL endpoints

Updated 6 months ago

openminds_matlab • Science 26%

A MATLAB toolbox for generating openMINDS-compliant linked metadata.

Updated 6 months ago

geonetwork • Science 44%

The official GeoNetwork fork for geOrchestra

Updated 5 months ago

https://github.com/cidgoh/grdi_amr_one_health • Science 39%

A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.

Updated 6 months ago

tirex-tracker • Science 44%

Automatic resource and metadata tracking for IR experiments.

Updated 6 months ago

somesy • Science 44%

A CLI tool for synchronizing software project metadata

Updated 5 months ago

https://github.com/colectica/ddiregistry • Science 23%

Registry software for the DDI Alliance Agency Registry

Updated 6 months ago

sigmf • Science 44%

The Signal Metadata Format Specification

Updated 6 months ago

pta_metadata • Science 49%

Metadata for PTA

Updated 6 months ago

cd2-survey • Science 44%

Code and processed data from the Connecting Data in Child Development (CD2) Vocabularies survey

Updated 6 months ago

copo-documentation • Science 26%

COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.

Updated 5 months ago

https://github.com/afuetterer/oaipmh-scythe • Science 23%

A Scythe for harvesting OAI-PMH repositories.

Updated 6 months ago

pav • Science 31%

PAV - Provenance Authoring and Versioning ontology

Updated 6 months ago

dataverseur • Science 39%

🫖 A dataverse API R wrapper to enhance the deposit procedure using only R variable declarations

Updated 6 months ago

hermes_metadata_lesson • Science 44%

Data and Metadata in the Humanities: Structures, Schemas, and Standards

Updated 5 months ago

https://github.com/cured-plus/csvw-duckdb • Science 13%

Convert a CSVW document (CSV metadata) to a DuckDB query to load a CSV file into a database.

Updated 6 months ago

omega • Science 18%

Open Microscopy Environment inteGrated Analysis (OMEGA) is a cross-platform data management, analysis and visualization system, for particle tracking data with particular emphasis on results from viral and vesicular trafficking experiments.

Updated 6 months ago

fairshare • Science 77%

Simplifying the curation and sharing of biomedical research data and software according to applicable FAIR guidelines

Updated 5 months ago

https://github.com/cityjson/cityjson-qgis-plugin • Science 26%

A QGIS plugin that adds support for CityJSON files