Projects

Updated 6 months ago

biolink-model • Rank 17.8 • Science 77%

Schema and generated objects for biolink data model and upper ontology

biolink datamodel gene-ontology json-api knowledge-graphs linkml monarchinitiative ncats ncats-translator neo4j obofoundry owl rdf specification standard yaml

Updated 6 months ago

ontogpt • Rank 16.7 • Science 77%

LLM-based ontological extraction tools, including SPIRES

ai chat-gpt data-modeling gpt-3 information-extraction language-models large-language-models linkml llm monarchinitiative named-entity-recognition ner nlp oaklib obofoundry relation-extraction

Updated 6 months ago

linkml • Rank 22.9 • Science 64%

Linked Open Data Modeling Language

data-dictionaries data-modeling hacktoberfest json-ld-context json-schema linked-data linkml linkml-schema modeling owl rdf schema semantic-web shacl shex standards

Updated 6 months ago

sssom • Rank 8.6 • Science 77%

Simple Standard for Sharing Ontology Mappings

linkml mapping mapping-commons mapping-standards mapping-tools metadata-elements monarchinitiative obofoundry owl sssom tsv

Updated 6 months ago

https://github.com/cidgoh/dataharmonizer • Rank 13.3 • Science 49%

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.