Updated 6 months ago
NormalyzerDE
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
Updated 6 months ago
dea_limma
A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.
Updated 6 months ago
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Updated 6 months ago
splineomics
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports