Updated 9 months ago
psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
Updated 9 months ago
kingfisher
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Updated 9 months ago
grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Updated 9 months ago
a-guide-to-automatically-downloading-ncbi-sra-reads
A Guide to Automatically Downloading NCBI SRA Reads
Updated 9 months ago
https://github.com/cdcgov/seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Updated 9 months ago
partie
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.