Updated 9 months ago

pysradb • Rank 17.5 • Science 77%

Package for fetching metadata and downloading data from SRA/ENA/GEO

Updated 9 months ago

fetchngs • Rank 8.7 • Science 67%

Pipeline to fetch metadata and raw FastQ files from public databases

Updated 9 months ago

kingfisher • Rank 11.6 • Science 44%

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

Updated 9 months ago

grabseqs • Rank 11.0 • Science 23%

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Updated 9 months ago

a-guide-to-automatically-downloading-ncbi-sra-reads • Science 67%

A Guide to Automatically Downloading NCBI SRA Reads

Updated 9 months ago

partie • Science 28%

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.