Scientific Software
Updated 6 months ago

Collaborative Container Modules with Singularity Registry HPC — Peer-reviewed • Rank 13.5 • Science 100%

Collaborative Container Modules with Singularity Registry HPC - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Singularity Compose — Peer-reviewed • Rank 11.1 • Science 100%

Singularity Compose: Orchestration for Singularity Instances - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Connectome Mapper 3 — Peer-reviewed • Rank 11.1 • Science 95%

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping - Published in JOSS (2022)

Mathematics Sociology Economics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

The Experiment Factory — Peer-reviewed • Rank 13.0 • Science 77%

The Experiment Factory: Reproducible Experiment Containers - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

Singularity Registry — Peer-reviewed • Rank 8.4 • Science 77%

Singularity Registry: Open Source Registry for Singularity Images - Published in JOSS (2017)

Computer Science (39%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Container Tree — Peer-reviewed • Rank 7.3 • Science 77%

Container Tree: Software to Model Container Filesystems, Packages, and Inheritance - Published in JOSS (2019)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 6 months ago

compss • Rank 8.5 • Science 67%

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.

Updated 6 months ago

plip • Rank 16.1 • Science 49%

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

Updated 6 months ago

scif • Rank 12.5 • Science 36%

scientific filesystem: a filesystem organization for scientific software and metadata

Updated 5 months ago

https://github.com/cokelaer/damona • Rank 8.5 • Science 36%

singularity environment manager (application to NGS and bioinformatics)

Updated 5 months ago

https://github.com/aces/cbrain-containers-recipes • Rank 1.8 • Science 23%

Recipes for singularity and docker containers used in CBRAIN

Updated 6 months ago

sif • Rank 4.2 • Science 10%

python client for reading sif image files

Updated 5 months ago

https://github.com/alan-turing-institute/ai-workflows • Rank 3.7 • Science 10%

A collections of portable, real-world AI workflows for testing and benchmarking

Updated 5 months ago

https://github.com/cokelaer/graphviz4all • Science 13%

dot and other graphviz executable in a simple singularity container

Updated 5 months ago

https://github.com/cnpem/hpc-containers • Science 26%

Apptainer/Singularity containers for HPC clusters

Scientific Software
Updated 6 months ago

HelpMe Command Line Helper Utility — Peer-reviewed • Science 77%

HelpMe Command Line Helper Utility - Published in JOSS (2018)

Updated 6 months ago

docker-builds • Science 67%

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

Updated 6 months ago

nf-gwas • Science 65%

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

Updated 6 months ago

TwistMethylFlow • Science 67%

A NextFlow pipeline for Twist NGS DNA Methylation data analysis

Updated 6 months ago

parametric-nn-models • Science 67%

Physics-Informed Neural Network, Finite Element Method enhanced neural network, and FEM data-based neural network

Updated 5 months ago

https://github.com/asadprodhan/blastn • Science 23%

How to automatically download blastn database, run blastn, and extract blastn hit sequences?

Updated 5 months ago

https://github.com/bast/contain-r • Science 26%

Apptainer/Singularity container for reproducible R environments.

Updated 5 months ago

https://github.com/cmelab/containers • Science 13%

Containerized software stacks for the Computational Materials Science Lab

Updated 5 months ago

https://github.com/ccbr/dockers • Science 13%

A collection of Dockerfiles to facilitate reproducibility across computing environments.

Updated 5 months ago

https://github.com/coderefinery/hpc-containers • Science 13%

Lesson about containers for HPC with focus on Apptainer.

Updated 5 months ago

https://github.com/con/shub • Science 10%

GitHub mirror of http://datasets.datalad.org/?dir=/shub providing historical copy of containers from https://singularity-hub.org

Updated 5 months ago

https://github.com/bencardoen/singularity_julia • Science 13%

Template definition file for Singularity RO containers with Julia and user package embedded.

Updated 6 months ago

shpc-registry • Science 36%

A remote registry for Singularity Registry HPC 🖊️

Updated 6 months ago

mpox-seek • Science 67%

A rapid pipeline for targeted and whole-genome ONT monkeypox sequencing

Updated 5 months ago

https://github.com/computationalproteomics/omicloupe • Science 10%

Understanding expression across comparisons and datasets through interactive visualization

Updated 6 months ago

containers-introduction-training • Science 36%

Course website "Docker and Singularity for reproducible research: getting started with containers"