Updated 10 months ago
https://github.com/broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
Updated 10 months ago
hiphase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Updated 10 months ago
germline-structuralv-nf
Germline structural variant calling pipeline for short read WGS datasets
Updated 10 months ago
sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
Updated 10 months ago
sv-gen
Snakemake-based workflow for generating artificial genomes with structural variants
Updated 10 months ago
variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Updated 10 months ago
rdscan
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Updated 10 months ago
sawfish
Joint structural variant and copy number variant caller for HiFi sequencing data