Updated 5 months ago
https://github.com/broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
Updated 6 months ago
variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Updated 6 months ago
sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
Updated 6 months ago
sv-gen
Snakemake-based workflow for generating artificial genomes with structural variants
Updated 6 months ago
rdscan
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Updated 6 months ago
sawfish
Joint structural variant and copy number variant caller for HiFi sequencing data
Updated 6 months ago
germline-structuralv-nf
Germline structural variant calling pipeline for short read WGS datasets
Updated 6 months ago
hiphase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads