Scientific Software
Updated 6 months ago

Rasusa — Peer-reviewed • Rank 17.1 • Science 93%

Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)

Updated 6 months ago

efp-seq_browser • Rank 4.2 • Science 75%

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

Updated 6 months ago

sequali • Rank 11.5 • Science 57%

Fast sequencing data quality metrics

Updated 6 months ago

megadepth • Rank 14.4 • Science 36%

R interface to megadepth: BigWig and BAM related utilities

Updated 6 months ago

fetch_ngs • Science 67%

Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.

Updated 6 months ago

bamtocov • Science 67%

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Updated 6 months ago

https://github.com/blockresearchgroup/compas_model • Science 26%

A universal model datastructure for design, analysis, fabrication, and construction

Updated 6 months ago

nf-fastq2bam • Science 57%

Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data

Updated 6 months ago

https://github.com/brentp/bedder-rs • Science 26%

an API for intersections of genomic data

Updated 6 months ago

get_mnv • Science 57%

Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads

Updated 6 months ago

https://github.com/brentp/hts-nim-tools • Science 13%

useful command-line tools written to showcase hts-nim