Rasusa
Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)
efp-seq_browser
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
https://github.com/biojulia/xam.jl
Parse and process SAM and BAM formatted files
https://github.com/brentp/bpbio
basepair bio: a single binary with many useful genomics subtools.
germline-structuralv-nf
Germline structural variant calling pipeline for short read WGS datasets
fetch_ngs
Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.
https://github.com/blockresearchgroup/compas_model
A universal model datastructure for design, analysis, fabrication, and construction
nf-fastq2bam
Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data
https://github.com/brentp/hts-nim-tools
useful command-line tools written to showcase hts-nim