https://github.com/kunpengren/awsome • Science 13%

demo

https://github.com/kunzaatko/boundarylayerproblem • Science 26%

Resources and Beamer presentation for a talk about perturbation methods that leads to solving a non-linear differential equation with a boundary layer.

https://github.com/kunzaatko/promptingtools.jl • Science 10%

Streamline your life using PromptingTools.jl, the Julia package that simplifies interacting with large language models.

ct_segmentation_eggs • Science 44%

This repository is part of a research work on obtaining morphometric measurements of the internal parts of chicken eggs using segmentation techniques using deep learning such as U-Net and FCN.

https://github.com/kurokida/prog-stat-ws • Science 49%

プログラミングと統計のワークショップ

https://github.com/kurokida/datapipe3 • Science 13%

https://github.com/kurokio/soso-spase • Science 10%

For creating Science On Schema.Org (SOSO) markup in dataset landing pages to improve data discovery through search engines.

https://github.com/kurokio/spase-datacite • Science 26%

For creating and updating DataCite DOIs for SPASE records.

https://github.com/kurokio/ivoa-presentation-files • Science 26%

Contains the schema.org and DataCite JSONs resulting from new mappings with SPASE

https://github.com/lamastex/expositions • Science 13%

This is a set of mathematical, statistical and computational expositions

https://github.com/lamastex/2022-mastersthesis-ammaraldhahyani • Science 13%

masters thesis

https://github.com/lamastex/coursepaths • Science 10%

course pathways

https://github.com/lamastex/jpautogradercomps • Science 13%

This is a repository for various components developed around semi/auto-grading a jupyter .ipynb notebook

https://github.com/lamastex/hawkesprocessesonmedia • Science 13%

Master's thesis of Alfred Lindstr\"om, Mathematics, Uppsala University, 2021 (exjobb of Combient Mix AB)

https://github.com/lamastex/2023-mastersthesis-axelsandstedt • Science 13%

Axel Sandstedt's Masters thesis

https://github.com/lamastex/spark-trend-calculus • Science 26%

To detect trends in time series using Andrew Morgan's trend calculus algorithms in Apache Spark and Scala from Antoine Amend's initial implementation

https://github.com/lamastex/scadamale • Science 26%

Scalable Data Science and Distributed Machine Learning Course Book written by Raazesh Sainudiin and his WASP AI-Track PhD Students

https://github.com/lczech/pool-seq-pop-gen-stats • Science 26%

https://github.com/lczech/come_2017 • Science 13%

Some sample files for the CoME2017 course to play around with.

https://github.com/lczech/ratatosk • Science 13%

Snakemake pipeline for phylogenetic placement of metagenomic sequences

https://github.com/lczech/grenepilot-paper • Science 36%

Scripts and analyses for the GrENE-net pilot dataset

https://github.com/lczech/grenedalf-paper • Science 26%

Code for tests and benchmarks of our paper on grenedalf

https://github.com/lesofger/horse_ascii • Science 26%

https://github.com/lesofger/pizza-palace1 • Science 26%

https://github.com/lesofger/telegram_bot_adb_checker • Science 26%

https://github.com/lesunb/diagnosis • Science 10%

Diagnosis

https://github.com/lesunb/morse_simulation • Science 13%

https://github.com/lesunb/jss-2022-replication-package • Science 10%

Replication package of the paper titled "An Architecture for Mission Coordination of Heterogeneous Robots"

https://github.com/lesunb/ais_bsn • Science 13%

https://github.com/lesunb/bsn_seams24 • Science 23%

Body Sensor Network (BSN): a prototype for exercising dependable adaptation in healthcare domain.

https://github.com/lesunb/bsn_rome_24 • Science 23%

Body Sensor Network (BSN): a prototype for exercising dependable adaptation in healthcare domain.

https://github.com/lesunb/implied_scenarios • Science 13%

Relevant files used for the project 'Characterization of Implied Scenarios as Families of Common Behavior'.

knn2 • Science 49%

https://github.com/linux-cpp-lisp/e3nn-jax • Science 23%

https://github.com/linux-cpp-lisp/pytorch_geometric • Science 23%

Geometric Deep Learning Extension Library for PyTorch

https://github.com/linux-cpp-lisp/opt_einsum • Science 23%

⚡️Optimizing einsum functions in NumPy, Tensorflow, Dask, and more with contraction order optimization.

https://github.com/linux-cpp-lisp/litmatter • Science 10%

Rapid experimentation and scaling of deep learning models on molecular and crystal graphs.

pyOMA2: A Python module for conducting operational modal analysis • Science 93%

pyOMA2: A Python module for conducting operational modal analysis - Published in JOSS (2025)

tmmax • Science 67%

A fast transfer matrix method written in jax for modelling optical multilayer thin films

drprg • Science 57%

Drug Resistance Prediction with Reference Graphs

bamojax • Science 67%

Bayesian Modelling using Jax

NonSysId: Nonlinear System Identification with Improved Model Term Selection for NARMAX Models • Science 93%

NonSysId: Nonlinear System Identification with Improved Model Term Selection for NARMAX Models - Published in JOSS (2025)

icei-puc-minas-modelagem-de-processos-de-negocios-sua-obra-aqui • Science 44%

THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool • Science 93%

THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool - Published in JOSS (2025)

https://github.com/fermi-ad/phoebus-fnal • Science 34%

FNAL phoebus product

ardt • Science 54%

A extensible Python library for working with AER research datasets such as CUADS, ASCERTAIN, DREAMER, and more

phylo2vec • Science 67%

Phylo2Vec: a vector representation for binary trees

PyDrugLogics: A Python Package for Predicting Drug Synergies Using Boolean Models • Science 93%

PyDrugLogics: A Python Package for Predicting Drug Synergies Using Boolean Models - Published in JOSS (2025)

the-well • Science 54%

A 15TB Collection of Physics Simulation Datasets

https://github.com/fermi-ad/interface-definitions • Science 34%

A source of truth location for gRPC protocol interface definition files.

MetaSpread: A cancer growth and metastatic spread simulation program in Python • Science 93%

MetaSpread: A cancer growth and metastatic spread simulation program in Python - Published in JOSS (2025)

mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration • Science 95%

mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration - Published in JOSS (2025)

deepinv • Science 54%

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

mlgidGUI - an annotation program for 2D scattering data • Science 93%

mlgidGUI - an annotation program for 2D scattering data - Published in JOSS (2025)

STON: SofTware for petrOgraphic visualisatioN • Science 87%

STON: SofTware for petrOgraphic visualisatioN - Published in JOSS (2025)

optimeo • Science 67%

OPTIMEO is a package doubled by a web application that helps you optimize your experimental process by generating a Design of Experiment, generating new experiments using Bayesian Optimization (BO), and analyzing the results of your experiments using Machine Learning models.

PathFinder: A Matlab/Octave package for oscillatory integration • Science 93%

PathFinder: A Matlab/Octave package for oscillatory integration - Published in JOSS (2025)

NeuroCAPs — Peer-reviewed • Science 93%

NeuroCAPs: A Python Package for Performing Co-Activation Patterns Analyses on Resting-State and Task-Based fMRI Data - Published in JOSS (2025)

ActiSleep Tracker — Peer-reviewed • Science 93%

ActiSleep Tracker: a Python-based dashboard for adjusting automatic sleep predictions of actigraphy data - Published in JOSS (2025)

HINA — Peer-reviewed • Science 98%

HINA: A Learning Analytics Tool for Heterogenous Interaction Network Analysis in Python - Published in JOSS (2025)

calzone-tool • Science 44%

Evaluating the Calibration of Probabilistic Models

torchbiosound • Science 54%

PANKH: An unsteady potential flow solver for hovering airfoils • Science 93%

PANKH: An unsteady potential flow solver for hovering airfoils - Published in JOSS (2025)

phcp-reco • Science 44%

Reconstruction scripts for post-mortem multi-quantitative fetal brain MRI at 11.7 teslas

zenodotest • Science 67%

elasticipy • Science 49%

A python toolkit to perform common tensor operations in Continuum Mechanics

https://github.com/fermi-ad/dbwr • Science 8%

Display Builder Web Runtime: Use many display builder screens in a web browser

eitprocessing • Science 44%

Software for electrical impedance tomography data loading, visualization and processing

agentspatched.jl • Science 67%

A clone of Agent.jl v.3.0.0 needed for reproducibility

sata • Science 67%

opensim-creator • Science 49%

A UI for building OpenSim models

oxypogon • Science 44%

A CrossFit Workout of the Day (WOD) viewer that uses Flat Data and OpenAI to scrape workout data and make it more accessible for beginners. The application provides detailed explanations, scaling options, and beginner-friendly modifications for CrossFit workouts.

blenderproc-6d-dataset • Science 49%

PyMetric: A Geometry Informed Array Mathematics Package • Science 87%

PyMetric: A Geometry Informed Array Mathematics Package - Published in JOSS (2026)

SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging • Science 87%

SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging - Published in JOSS (2026)

SpmImageTycoonInstaller • Science 67%

Installer for SpmImage Tycoon

pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms • Science 87%

pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms - Published in JOSS (2026)

vkcompviz • Science 44%

Vulkan image and data processing framework capable of running a cascade of compute shaders and displaying or storing the result.

yolov8_msg • Science 54%

openvqe • Science 57%

Quantum computing algorithms and applications package. Please check our article https://doi.org/10.1002/wcms.1664. Do you want to contribute? Fork the project, create a pull request directed to the alpha branch of the repo.

cardiomechanics • Science 44%

Finite element framework for cardiac electromechanics problems

gptopus • Science 44%

🐙GPTopus is a decoder-only transformer that generates new text based on input text

cpp-struct-byte-order-converter • Science 44%

⚒ A PowerShell script used to generate byte reversing functions for a C/C++ structure.（用于为C/C++结构体生成字节序翻转函数的PowerShell脚本。）

rosettacots • Science 44%

R-package for quantitative translation between COTS measurement tools

clld-corpus-plugin • Science 44%

clld-corpus-plugin

ppesage • Science 44%

Simplified Additive Gaussian process Emulator (sage) for climate model PPEs

dynamic-lightweight-upsampling • Science 44%

edirom-image-viewer • Science 44%

measure-traces • Science 44%

Repo for measuring (Internet) traces. Evaluate micro-batching in data stream processing and the impact of a batch loss on Count-Min Sketch estimation error.

aem-v2 • Science 57%

AEM-Automated Electromagnetic MKID Simulations. MATLAB application used for the automated construction and design of MKID pixels in Sonnet to match specific resonant frequencies and Qc valued. This is the latest version of AEM and works with Sonnet version 18.

python-attrs • Science 44%

This is frozen/no-commits mirror of the https://github.com/python-attrs/attrs.git

stats-base-dists-planck-logcdf • Science 44%

Evaluate the logarithm of cumulative distribution function (CDF) for a Planck (discrete exponential) distribution.

ff • Science 67%

Source code for the FF library written by Geert Jan van Oldenborgh

confocal_z-stack_analysis • Science 67%

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.

job-description-bias • Science 44%

Exploring Gender Bias in AI-Generated Job Descriptions

board-game-archive • Science 44%

This collection contains images of tabletop games and the components necessary to play them. It is intended to provide descriptive information about various tabletop games and to inventory their components in the case of loss, damage, repair, or replacement.

slitlessutils • Science 75%

delicoco-ieee-transactions • Science 67%

In compressed decentralized optimization settings, there are benefits to having multiple gossip steps between subsequent gradient iterations, even when the cost of doing so is appropriately accounted for e.g. by means of reducing the precision of compressed information.

imesc_beta2 • Science 44%

modern-dgf • Science 57%

An open modern comprehensive, auditable science data management and governance framework aligned with policy guidelines as well as community best practices. The framework provides requirements as well as management tasks that can be customized for each new project.