GitHub
prisma-flow-diagram
This package provides an abstraction for creating PRISMA 2009 flow diagrams in LaTeX.
proteinfertorch
Unofficial PyTorch version of ProteInfer, originally implemented in TensorFlow 1.X and converted for PyTorch compatibility.
https://github.com/cbg-ethz/ctc-scite
Computational method and analyses to study the clonality of circulating tumor cell clusters
voc4fun-server
A mobile application featuring a flashcard learning system with a self-regulating learning mechanism. It dynamically adjusts daily goals based on the learner's progress.
wifi-based-landmark-estimation
Research project files concerning non-stationary landmark localization
glenoidplanefitting
A tool kit for performing Glenoid version measurement for shoulder reconstruction surgery
biodt-fair
Documentation, resources, and other materials related to FAIR and open science from the BioDT project.
coordinate-regression
Coordinate regression with biologically realistic neural networks
hochfrequente_mental_health_surveillance
Im Rahmen der Mental Health Surveillance (MHS) am Robert Koch-Institut (RKI) werden für eine Auswahl an Indikatoren der psychischen Gesundheit von Erwachsenen basierend auf Surveydaten Zeitreihen bestehend aus gleitenden Drei-Monats-Schätzern und Glättungskurven berechnet. Dadurch sollen Entwicklungen in der psychischen Gesundheit der erwachsene...
dsd-vocabulary
The Data Source Description Vocabulary (DSD) allows the representation of data sources and their internal structure independently of their type.
stars-reproduce-allen-2020
Test-run of our reproducibility protocol on Allen et al. 2020: "A simulation modelling toolkit for organising outpatient dialysis services during the COVID-19 pandemic"
visualroberta
The first public Vietnamese visual linguistic foundation model(s)
myriam
MYRIAM is an open-access, computationally-inexpensive, user-friendly software that allow users to compute the torque variations required to produce given changes in plate motions.
WorldOceanAtlasTools
Tools do download and interpolate data from the World Ocean Atlas
mjoindices
This repository provides a Python implementation of the calculation algorithm for the OLR-based MJO index (OMI).
xcfun
XCFun: A library of exchange-correlation functionals with arbitrary-order derivatives
synopticpy
Retrieve mesonet weather data as Polars DataFrames from Synoptic's Weather API.
howfairis
Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations
hfradarpy
Toolbox to read in High Frequency Radar (HFR) files written in the Codar Tabular Format (CTF). Easily read CODAR Ocean Sensors SeaSonde and HELZEL Messtechnik GmbH WERA radial files.
@stdlib/random-base-minstd
A linear congruential pseudorandom number generator (LCG) based on Park and Miller.
https://github.com/ornladios/adios2
Next generation of ADIOS developed in the Exascale Computing Program
Swiftest
Swiftest: An \textit{N}-body Integrator for Gravitational Systems - Published in JOSS (2023)
com.eldrix/hermes
A library and microservice implementing the health and care terminology SNOMED CT with support for cross-maps, inference, fast full-text search, autocompletion, compositional grammar and the expression constraint language.
stress-ng
This is the stress-ng upstream project git repository. stress-ng will stress test a computer system in various selectable ways. It was designed to exercise various physical subsystems of a computer as well as the various operating system kernel interfaces.
iml
iml: An R package for Interpretable Machine Learning - Published in JOSS (2018)
obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
aif360
A comprehensive set of fairness metrics for datasets and machine learning models, explanations for these metrics, and algorithms to mitigate bias in datasets and models.
eval-suite
[ACL 2024] User-friendly evaluation framework: Eval Suite & Benchmarks: UHGEval, HaluEval, HalluQA, etc.
randomNames
Function to generate random gender and ethnicity correct first and/or last names. Names are chosen proportionally based upon their probability of appearing in a large scale data base of real names.
weaviate
Weaviate is an open-source vector database that stores both objects and vectors, allowing for the combination of vector search with structured filtering with the fault tolerance and scalability of a cloud-native database.
itslive
NOTE: this book is no longer maintained. Please go to 'Cloud-native geospatial data cube workflows,' linked below, instead.
hires-literature
All the literature on high-resolution spectroscopy of exoplanet atmospheres — theory and observation.
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
proteomics-sample-metadata
The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
gap
Main development repository for GAP - Groups, Algorithms, Programming, a System for Computational Discrete Algebra
celeritas
Celeritas is a new Monte Carlo transport code designed to accelerate scientific discovery in high energy physics by improving detector simulation throughput and energy efficiency using GPUs.
https://github.com/clima/climaocean.jl
🌎 Regional-to-global coupled ocean and sea ice simulations based on Oceananigans
django-ddm
Data Donation Module: A Django application to setup and manage data donation projects.
public_open_source_data_science
A repository of open source data science projects for social good
macrophage-regulation
Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation
minesweepears
MineSweepears Island is a hex-based puzzle game inspired by Minesweeper, where players use spatial audio cues to detect hidden mines. Created for Ludum Dare 32, the game blends strategy with innovative sound-based gameplay.
ncse-seminar-2022
National Centre for Statistical Ecology seminar, Feb 9th, 2022
giantkelpdynamics
Dynamical model for the motion of giant kelp (Macrocystis pyrifera). Accompanies "A model of tidal flow and tracer release in a giant kelp forest"(Strong-Wright and Taylor, In review)
airs
The AIRS Code Collection enables data processing and analysis for remote sensing observations captured by NASA's Atmospheric InfraRed Sounder.
pytacite
A flexible and lightweight Python interface to the DataCite database (datacite.org)
desarrollo_sector_pesquero_acuicola
Este trabajo identifica y analiza las oportunidades más relevantes para la evolución futura del sector pesquero
sc2-benchmark
[TMLR] "SC2 Benchmark: Supervised Compression for Split Computing"
nearoptimalalternatives.jl
A package implementing modelling to generate alternatives (MGA) to find near optimal alternatives to the optimal solution.
Eclipse Golo
Eclipse Golo - Published in JOSS (2016)
PoissonRandom
Fast Poisson Random Numbers in pure Julia for scientific machine learning (SciML)
https://github.com/bashtage/linearmodels
Additional linear models including instrumental variable and panel data models that are missing from statsmodels.
data-organisation-for-better-analysis
Data Organization in Spreadsheets to Ease Further Processing
alpaqa
Library for nonconvex constrained optimization using the augmented Lagrangian method and the matrix-free PANOC algorithm.
acro
Tools for the Semi-Automatic Checking of Research Outputs. These are tools for researchers to use as drop-in replacements for common analysis commands.
https://github.com/aureme/esmecata
From taxonomic affiliations to annotated consensus proteomes using UniProt database.
@stdlib/blas-ext-base-gsumpw
Calculate the sum of strided array elements using pairwise summation.
tokenizers
💥 Fast State-of-the-Art Tokenizers optimized for Research and Production
nempi
Nested Effects Models based Perturbation Inference - https://doi.org/10.1093/bioinformatics/btab113 - https://bioconductor.org/packages/nempi
