flowdock • Science 67%

A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)

constrainthg • Science 67%

General system simulation using constraint hypergraphs

hasher • Science 54%

Generate hashes for files and folders. Aimed at file/folder comparison, not encryption.

detect_people_from_video • Science 54%

เป็นงานในวิชา 204451

mixing-ann • Science 44%

Repository for the generation of 100k CFD simulations of mixing systems and the training of an ANN predicting the power consumption

itwinai • Science 44%

Advanced AI workflows for scientific digital twins

hermes-rheo • Science 49%

Python package designed to complement and extend the piblin library, offering a set of transforms tailored for analysis of rheological data

coqui-tts • Science 54%

SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery • Science 87%

SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery - Published in JOSS (2026)

torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch • Science 87%

torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)

https://github.com/spectralmatch/spectralmatch • Science 49%

Relative radiometric normalization toolkit for raster mosaics and time series

manimce_source_code_analysis • Science 44%

FAIRmaterials: Ontology Tools with Data FAIRification in Development • Science 87%

FAIRmaterials: Ontology Tools with Data FAIRification in Development - Published in JOSS (2026)

tools4rdf • Science 44%

Collection of tools for working with RDF data

$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices • Science 90%

$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices - Published in JOSS (2026)

recipic • Science 44%

It is a tool that could transfer the procedural text into visual symbols.

aiida-aimall: A Python package for automating workflows for AIMAll software • Science 87%

aiida-aimall: A Python package for automating workflows for AIMAll software - Published in JOSS (2026)

558_deep-learning • Science 44%

test • Science 67%

serofoi • Science 44%

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis • Science 87%

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization • Science 87%

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)

laplace-lora • Science 54%

Course Project for the course CS772A: Probabilistic Machine Learning

ccxg-collostructional • Science 44%

R scripts for the collostructional analysis of a ccxg propbank-annotated file.

lexces-silicosis-predict • Science 67%

This repository contains the code and documentation for the evaluation of a diagnostic prediction rule for silicosis

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library • Science 87%

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)

A Python API for OTTER • Science 87%

A Python API for OTTER - Published in JOSS (2026)

c3dr • Science 67%

Read and write C3D motion capture data in R

rydiqule • Science 75%

Rydberg Sensor Interactive Quantum Physics Module

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles • Science 87%

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)

Dyad: a binary-star dynamics and statistics library for Python • Science 87%

Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)

pyfive: A pure-Python HDF5 reader • Science 92%

pyfive: A pure-Python HDF5 reader - Published in JOSS (2026)

r.earthworks • Science 67%

An add-on tool for computational terrain modeling in GRASS

BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows • Science 87%

BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows - Published in JOSS (2026)

regularizedoptimization.jl • Science 67%

Algorithms for regularized optimization

milptune • Science 44%

Automatic MILP solver configuration by learning problem similarities

anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali • Science 87%

anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali - Published in JOSS (2026)

Htool-DDM: A C++ library for parallel solvers and compressed linear systems. • Science 92%

Htool-DDM: A C++ library for parallel solvers and compressed linear systems. - Published in JOSS (2026)

KinOpt: A Python package for chemical kinetics analysis and optimization • Science 87%

KinOpt: A Python package for chemical kinetics analysis and optimization - Published in JOSS (2026)

everest_meta • Science 67%

FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia • Science 87%

FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia - Published in JOSS (2026)

velocity-estimation • Science 44%

Velocity estimation algorithm for imaging data in turbulent flows

Graphorge: An open-source forge of graph neural networks • Science 87%

Graphorge: An open-source forge of graph neural networks - Published in JOSS (2026)

tangram, an open platform for modular, real-time air traffic management research • Science 96%

tangram, an open platform for modular, real-time air traffic management research - Published in JOSS (2025)

simulist • Science 67%

An R package for simulating line lists

lg4x • Science 57%

A graphical user interface of Python lmfit package was developed for standard X-ray photoemission spectroscopy (XPS) curve fitting analysis. The interface streamlines the fitting procedures for validating results and their consistency.

faceformer • Science 54%

[CVPR 2022] Neural Face Identification in a 2D Wireframe Projection of a Manifold Object

thesisiscode • Science 44%

A repository for the Geological Society of America 2020 & 2021 Workshops - Your Thesis is Code

powerfactory-tools • Science 75%

A Python toolbox for the (external) control of DIgSILENT PowerFactory.

times_model • Science 23%

The Integrated MARKAL-EFOM System (TIMES) - a bottom-up optimization model for energy-environment systems

rnk-libro • Science 44%

My solutions to the activities proposed into the classic programming book: The C programming Language by Brian W. Kernigham & Dennis M. Ritche

great-expectations__great_expectations • Science 49%

st4sd-registry-backend • Science 44%

REST Proxy to the ST4SD Runtime Service used by the ST4SD Registry UI. Retrieve parameterised virtual-experiment packages, experiment instances, and view logs.

baysc: An R package for Bayesian survey clustering • Science 87%

baysc: An R package for Bayesian survey clustering - Published in JOSS (2026)

auxotrophrangeexpansionmodel • Science 57%

biodiscvr: Biomarker Discovery Using Composite Value Ratios • Science 87%

biodiscvr: Biomarker Discovery Using Composite Value Ratios - Published in JOSS (2026)

Napari-3D-Counter: A manual cell counter for napari • Science 87%

Napari-3D-Counter: A manual cell counter for napari - Published in JOSS (2026)

vasp_ldos_map • Science 67%

Methods for interpolating the local density of states (ldos) from a VASP calculation. The ldos is weighted by the tunneling probability from a specified position above the surface, producing results analogous to a scanning tunneling microscopy experiment.

plmg-cc-ti2-2024-1-g22-bilhete-facil • Science 44%

plmg-cc-ti2-2024-1-g22-bilhete-facil created by GitHub Classroom

PySGN: A Python package for constructing synthetic geospatial networks • Science 87%

PySGN: A Python package for constructing synthetic geospatial networks - Published in JOSS (2026)

rancoord • Science 44%

RanCoord is a Python package for random sampling of geographic coordinates

arcloc • Science 67%

evoxels: A differentiable physics framework for voxel-based microstructure simulations • Science 87%

evoxels: A differentiable physics framework for voxel-based microstructure simulations - Published in JOSS (2026)

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions • Science 87%

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions - Published in JOSS (2026)

oscillations-in-covid-19-data • Science 57%

Code accompanying the article "Modeling the Drivers of Oscillations in COVID-19 Data on College Campuses" published in Annals of Epidemiology.

Tissue Data Explorer: a website template for presenting tissue sample research findings • Science 95%

Tissue Data Explorer: a website template for presenting tissue sample research findings - Published in JOSS (2026)

targene-pipeline • Science 44%

Nextflow pipeline for Targeted-Learning of genetic effects

softpandas • Science 44%

dbchatpro • Science 44%

Query a Sql DB with Gpt 3.5 turbo

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization • Science 87%

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization - Published in JOSS (2026)

etl-forge • Science 54%

ParaDigMa: a Python toolbox for extracting Parkinson's disease digital biomarkers from daily life wrist sensor data • Science 92%

ParaDigMa: a Python toolbox for extracting Parkinson's disease digital biomarkers from daily life wrist sensor data - Published in JOSS (2026)

rmcmc • Science 57%

Robust Markov chain Monte Carlo methods in R

biobb-morph • Science 49%

localization-symm_asymm • Science 49%

An Empirical Study of the Transmission Power Setting for Bluetooth-Based Indoor Localization Mechanisms

datatidy24sta5069z • Science 44%

Tidy data for analysis for STA5069Z course

layer-number-identification-of-tmds • Science 44%

This repostory contains all the code and files supplementing Layer number determination of TMDs.

osiris • Science 44%

Optical model ScatterIng & ReactIon Software (OSIRIS)

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data • Science 93%

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data - Published in JOSS (2025)

comp-432-project • Science 44%

Chemical Recommender System: Replacement Suggestions for Small Molecules • Science 87%

Chemical Recommender System: Replacement Suggestions for Small Molecules - Published in JOSS (2026)

SpectralUnmixing • Science 44%

Spectral unmixing, oriented towards imaging spectroscopy data. Lots of flavors included.

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control • Science 87%

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control - Published in JOSS (2025)

thiefdetector • Science 44%

emgflow • Science 44%

Github repository for the EMGFlow Python package.

sci • Science 44%

MatrixBandwidth • Science 44%

Fast algorithms for matrix bandwidth minimization and matrix bandwidth recognition in Julia.

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination • Science 87%

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination - Published in JOSS (2025)

molify: Molecular Structure Interface • Science 87%

molify: Molecular Structure Interface - Published in JOSS (2025)

dispersiveshallowwater.jl • Science 67%

A Julia library of structure-preserving numerical methods for dispersive wave equations

dphil • Science 44%

Source code for DPhiL website

monkeypox_equity • Science 44%

State-level data on monkeypox cases and immunizations by race and ethnicity

grepq — Peer-reviewed • Science 98%

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)

gibbonNetR — Peer-reviewed • Science 93%

gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data - Published in JOSS (2025)

queue-simulation • Science 44%

Simulation and stochastic modelling of different types of queues with some analysis.

gtexr — Peer-reviewed • Science 98%

gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API - Published in JOSS (2025)

pbr-ads-2024-1-1-ti-aw-t1-pbr-ads-2024-1-1-ti-aw-ecotrade • Science 44%

pbr-ads-2024-1-1-ti-aw-t1-pbr-ads-2024-1-1-ti-aw-ecotrade created by GitHub Classroom

python • Science 44%

pyvotca • Science 44%

Generic tools to interact with Votca using Python

dmp • Science 44%

这个是对dmp的代码进行微调的仓库