GitHub
mmgis
Multi-Mission Geographical Information System - Web-based Mapping and Spatial Data Infrastructure for Planetary Science Operations - https://nasa-ammos.github.io/MMGIS/
Altair
Altair: Interactive Statistical Visualizations for Python - Published in JOSS (2018)
fuxictr
A configurable, tunable, and reproducible library for CTR prediction https://fuxictr.github.io
Catalyst
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
mermaid
Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown
quantus
Quantus is an eXplainable AI toolkit for responsible evaluation of neural network explanations
pyiron
pyiron - an integrated development environment (IDE) for computational materials science.
DEPP - Differential Evolution Parallel Program
DEPP - Differential Evolution Parallel Program - Published in JOSS (2020)
autoStreamTree
autoStreamTree: Genomic variant data fitted to geospatial networks - Published in JOSS (2024)
PyMS
PyMS: Python for Mycorrhizal Symbiosis data analysis - Published in JOSS (2019)
SeqPeelSort
SeqPeelSort: a spike sorting algorithm for single sensillum recordings - Published in JOSS (2018)
TEfits
TEfits: Nonlinear regression for time-evolving indices - Published in JOSS (2020)
scikit-maad
Open-source and modular toolbox for quantitative soundscape analysis in Python
cytoscape-expand-collapse
A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs
pytest
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
decimer
DECIMER Image Transformer is a deep-learning-based tool designed for automated recognition of chemical structure images. Leveraging transformer architectures, the model converts chemical images into SMILES strings, enabling the digitization of chemical data from scanned documents, literature, and patents.
geocat-examples
GeoCAT-examples provides a gallery of visualization examples demonstrating how to reproduce plots from NCL Applications scripts with packages in Python. It also includes some longer form examples demonstrating how to use functionality from various GeoCAT packages.
cytoscape-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
naturf
naturf: a package for generating urban parameters for numerical weather modeling - Published in JOSS (2024)
pypartmc
Python (and C++) interface to PartMC with Jupyter/Python, Julia and Matlab examples
autopytorch
Automatic architecture search and hyperparameter optimization for PyTorch
helm
Holistic Evaluation of Language Models (HELM) is an open source Python framework created by the Center for Research on Foundation Models (CRFM) at Stanford for holistic, reproducible and transparent evaluation of foundation models, including large language models (LLMs) and multimodal models.
pythermalcomfort
Package to calculate several thermal comfort indices (e.g. PMV, PPD, SET, adaptive) and convert physical variables.
tensorcircuit
Tensor network based quantum software framework for the NISQ era
Fast k-medoids Clustering in Rust and Python
Fast k-medoids Clustering in Rust and Python - Published in JOSS (2022)
Trixi
Trixi.jl: Adaptive high-order numerical simulations of conservation laws in Julia
maidr-legacy
[DEPRECATED prototype] Multimodal Access and Interactive Data Representation
DynamicPolynomials
Multivariate polynomials implementation of commutative and non-commutative variables
hatchet
Graph-indexed Pandas DataFrames for analyzing hierarchical performance data
NCDatasets.jl
NCDatasets.jl: a Julia package for manipulating netCDF data sets - Published in JOSS (2024)
ROSS - Rotordynamic Open Source Software
ROSS - Rotordynamic Open Source Software - Published in JOSS (2020)
isofit
Imaging Spectrometer Optimal FITting (ISOFIT) contains a set of routines and utilities for fitting surface, atmosphere and instrument models to imaging spectrometer data.
tts
🐸💬 - a deep learning toolkit for Text-to-Speech, battle-tested in research and production
climpred
climpred: Verification of weather and climate forecasts - Published in JOSS (2021)
PowerSystems
Data structures in Julia to enable power systems analysis. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.
gkwreg: An R Package for Generalized Kumaraswamy Regression Models for Bounded Data
gkwreg: An R Package for Generalized Kumaraswamy Regression Models for Bounded Data - Published in JOSS (2026)
vidore-benchmark
Vision Document Retrieval (ViDoRe): Benchmark. Evaluation code for the ColPali paper.
fusion-blossom
A fast minimum-weight perfect matching solver for quantum error correction
qmflows
This library tackles the construction and efficient execution of computational chemistry workflows
imaging-server-kit
Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.
integron_finder
Bioinformatics tool to find integrons in bacterial genomes
topoptlab: An Open and Modular Framework for Benchmarking and Research in Topology Optimization
topoptlab: An Open and Modular Framework for Benchmarking and Research in Topology Optimization - Published in JOSS (2026)
ccompass
A Neural Network Tool for Multi-Omic Classification of Cell Compartments
foyer
A package for atom-typing as well as applying and disseminating forcefields
shimmy
An API conversion tool for popular external reinforcement learning environments
parpe
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
decaylanguage
Package to parse decay files, describe and convert particle decays between digital representations.
