GenomicSuperSignature • Rank 14.0 • Science 59%

Interpretation of RNAseq experiments through robust, efficient comparison to public databases

ecmwfr • Rank 14.0 • Science 59%

Interface to the public ECMWF API Web Services

ram-scb • Rank 6.0 • Science 67%

RAM-SCB is a unique code that combines a kinetic model of ring current plasma with a three dimensional force-balanced model of the terrestrial magnetic field to simulate Earth's inner magnetosphere.

clip2imgur • Rank 6.0 • Science 67%

A simple macOS command line tool for uploading your screenshots from clipboard to Imgur

deepgravity • Rank 6.0 • Science 67%

a PyTorch implementation of the paper "Deep Gravity: enhancing mobility flows generation with deep neural networks and geographic information"

ggmice • Rank 6.0 • Science 67%

Visualize incomplete and imputed data with the R package `ggmice`

fba • Rank 6.0 • Science 67%

Tools for single-cell feature barcoding analysis

hydroroot • Rank 6.0 • Science 67%

Simulation of hydraulic root architecture

gflownet • Rank 9.0 • Science 64%

Generative Flow Networks - GFlowNet

TensorToolbox • Rank 9.0 • Science 64%

Julia package for tensors as multidimensional arrays, with functionalty within Tucker format, Kruskal (CP) format, Hierarchical Tucker format and Tensor Train format.

KomaMRI • Rank 14.0 • Science 59%

Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.

react-native-auto-height-image • Rank 19.0 • Science 54%

🖼️React native auto height image

con2020 • Rank 6.0 • Science 67%

ukat • Rank 9.0 • Science 64%

UKRIN Kidney Analysis Toolbox

wikipedia • Rank 6.0 • Science 67%

Wikipedia chemical structure explorer

pypower • Rank 19.0 • Science 54%

Port of MATPOWER to Python

changepoint • Rank 19.0 • Science 54%

A place for the development version of the changepoint package on CRAN.

viabel • Rank 9.0 • Science 64%

Efficient, lightweight variational inference and approximation bounds

actix-telepathy • Rank 16.0 • Science 57%

Cluster extension for actix

py-xarray-regrid • Rank 6.0 • Science 67%

Regridding utility for xarray

Bedtoolsr — Peer-reviewed • Rank 6.0 • Science 67%

Bedtoolsr: An R package for genomic data analysis and manipulation - Published in JOSS (2019)

r-intro-geospatial • Rank 9.0 • Science 64%

Introduction to R for Geospatial Data

colrev • Rank 14.0 • Science 59%

CoLRev: An open-source environment for collaborative reviews

differential-privacy-library • Rank 19.0 • Science 54%

Diffprivlib: The IBM Differential Privacy Library

bamtofastq • Rank 6.0 • Science 67%

Converts bam or cram files to fastq format and does quality control.

hydra-floods • Rank 13.9 • Science 59%

HYDrologic Remote sensing Analysis for Floods Python package

microscope • Rank 13.9 • Science 59%

Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.

ROSCO • Rank 13.9 • Science 59%

A Reference Open Source Controller for Wind Turbines

windninja • Rank 8.9 • Science 64%

A diagnostic wind model developed for use in wildland fire modeling.

dmri-commit • Rank 13.9 • Science 59%

Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI

QuadGK • Rank 18.9 • Science 54%

adaptive 1d numerical Gauss–Kronrod integration in Julia

pygsp • Rank 18.9 • Science 54%

Graph Signal Processing in Python

unlimiformer • Rank 8.9 • Science 64%

Public repo for the NeurIPS 2023 paper "Unlimiformer: Long-Range Transformers with Unlimited Length Input"

bio-epidemiology-ner • Rank 5.9 • Science 67%

Recognize bio-medical entities from a text corpus

pyubx2 • Rank 18.9 • Science 54%

Python library for parsing and generating UBX GPS/GNSS protocol messages.

https://github.com/bluebrain/atlas-download-tools • Rank 5.9 • Science 67%

Search, download, and prepare brain atlas data.

simpleitk • Rank 23.9 • Science 49%

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

aspire • Rank 13.9 • Science 59%

Algorithms for Single Particle Reconstruction

blastmining • Rank 5.9 • Science 67%

Mining NCBI BLAST output

opencage • Rank 18.9 • Science 54%

:globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:

bayesim • Rank 10.9 • Science 62%

Bayes for anything!

einops • Rank 28.9 • Science 44%

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

mzcore • Rank 5.9 • Science 67%

A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation

epiregulon • Rank 13.9 • Science 59%

inference of transcription factor activity at the single cell level

gas-reporting • Rank 5.9 • Science 67%

Reference documentation on every gas price API and all the different formats

NRWAL • Rank 13.8 • Science 59%

The National Renewable Energy Laboratory Wind Analysis Libray (NRWAL)

finetuning-scheduler • Rank 13.8 • Science 59%

A PyTorch Lightning extension that accelerates and enhances foundation model experimentation with flexible fine-tuning schedules.

GFF3toEMBL — Peer-reviewed • Rank 5.8 • Science 67%

GFF3toEMBL: Preparing annotated assemblies for submission to EMBL - Published in JOSS (2016)

DINCAE • Rank 5.8 • Science 67%

DINCAE (Data-Interpolating Convolutional Auto-Encoder) is a neural network to reconstruct missing data in satellite observations.

statcanR • Rank 15.8 • Science 57%

R Package to connect to Statistics Canada's open data portal

etrainee • Rank 5.8 • Science 67%

E-learning course on Time Series Analysis in Remote Sensing for Understanding Human-Environment Interactions

datapackager • Rank 13.8 • Science 59%

An R package to enable reproducible data processing, packaging and sharing.

brushnet • Rank 8.8 • Science 64%

[ECCV 2024] The official implementation of paper "BrushNet: A Plug-and-Play Image Inpainting Model with Decomposed Dual-Branch Diffusion"

occnet • Rank 8.8 • Science 64%

[ICCV 2023] OccNet: Scene as Occupancy

Pyinterpolate — Peer-reviewed • Rank 13.8 • Science 59%

Pyinterpolate: Spatial interpolation in Python for point measurements and aggregated datasets - Published in JOSS (2022)

https://github.com/awslabs/gluonts • Rank 26.8 • Science 46%

Probabilistic time series modeling in Python

whatshap • Rank 18.8 • Science 54%

Read-based phasing of genomic variants, also called haplotype assembly

https://github.com/awslabs/open-data-registry • Rank 13.8 • Science 59%

A registry of publicly available datasets on AWS

ModalDecisionTrees • Rank 5.8 • Science 67%

Julia implementation of Modal Decision Trees & Forests, for interpretable classification of spatial and temporal data. Long live Symbolic Learning!!

rascal • Rank 5.8 • Science 67%

Python package to reconstruct and extend observational climate series through empricial downscaling of large-scale models

commonpy • Rank 10.8 • Science 62%

Collection of common Python utility functions and classes used in other Caltech Library programs.

nnSVG • Rank 13.8 • Science 59%

nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data

MutableArithmetics • Rank 15.8 • Science 57%

Interface for arithmetics on mutable types in Julia

g2p • Rank 18.8 • Science 54%

Grapheme-to-Phoneme transductions that preserve input and output indices, and support cross-lingual g2p!

multgee • Rank 13.8 • Science 59%

GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parameterization.

power-grid-model-ds • Rank 5.7 • Science 67%

Data Science toolkit for Power Grid Model

academic-observatory-workflows • Rank 8.7 • Science 64%

Telescopes, Workflows and Data Services for the Academic Observatory

pyrcel • Rank 13.7 • Science 59%

A 0D, adiabatic cloud parcel model for studying aerosol activation.

ArrayInterface • Rank 18.7 • Science 54%

Designs for new Base array interface primitives, used widely through scientific machine learning (SciML) and other organizations

edspdf • Rank 5.7 • Science 67%

EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.

python-dts-calibration • Rank 5.7 • Science 67%

A Python package to load raw Distributed Temperature Sensing (DTS) files, perform a calibration, and plot the result.

https://github.com/chains-project/bump • Rank 5.7 • Science 67%

A dataset of reproducible breaking dependency updates, SANER 2024 (https://doi.org/10.1109/SANER60148.2024.00024)

https://github.com/microsoft/mlos • Rank 13.7 • Science 59%

MLOS is a project to enable autotuning for systems.

plantuml • Rank 28.7 • Science 44%

Generate diagrams from textual description

mobilitydcat-ap • Rank 5.7 • Science 67%

Repository of the metadata specification mobilityDCAT-AP

dtacs • Rank 5.7 • Science 67%

DTACS: Onboard atmospheric correction emulator for S2 and PhiSat

panda-py • Rank 5.7 • Science 67%

Python bindings for real-time control of Franka Emika robots.

how-to-create-a-map-for-print-and-web-using-qgis • Rank 0.7 • Science 72%

QGIS Workshop Material: How to create a basic map for print and web using QGIS

prime-pipeline • Rank 0.7 • Science 72%

An example pipeline that computes metrics of a repository

slicer-timeline • Rank 0.7 • Science 72%

DeepArc 3D Slicer Timeline extension

aizynthfinder • Rank 15.7 • Science 57%

A tool for retrosynthetic planning

phylotreelib • Rank 8.7 • Science 64%

Library for analyzing and manipulating phylogenetic trees

pairtools • Rank 13.7 • Science 59%

Extract 3D contacts (.pairs) from sequencing alignments

pygac • Rank 13.7 • Science 59%

A python package to read and calibrate NOAA and Metop AVHRR GAC and LAC data

chemotion_eln • Rank 10.7 • Science 62%

Electronic Lab Notebook

ugropy • Rank 10.7 • Science 62%

A Python library designed to swiftly and effortlessly obtain the UNIFAC-like groups from molecules by their names and subsequently integrate them into inputs for thermodynamic libraries. UNIFAC, PSRK, Joback, and Abdulelah-Gani models are implemented.

rang • Rank 15.7 • Science 57%

🐶 (Re)constructing R computational environments

differentiationinterface.jl • Rank 18.7 • Science 54%

An interface to various automatic differentiation backends in Julia.

kwandl • Rank 5.7 • Science 67%

Keyword arguments handled

nat • Rank 13.7 • Science 59%

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Roots • Rank 18.7 • Science 54%

Root finding functions for Julia

ames • Rank 10.6 • Science 62%

Automated Metadata Service

code2seq • Rank 8.6 • Science 64%

Code for the model presented in the paper: "code2seq: Generating Sequences from Structured Representations of Code"

pyprobables • Rank 18.6 • Science 54%

Probabilistic data structures in python http://pyprobables.readthedocs.io/en/latest/index.html

netascore • Rank 5.6 • Science 67%

NetAScore - Network Assessment Score Toolbox for Sustainable Mobility

ctmm • Rank 15.6 • Science 57%

Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.

fm128-radar • Rank 5.6 • Science 67%

embedding-atlas • Rank 18.6 • Science 54%

Embedding Atlas is a tool that provides interactive visualizations for large embeddings. It allows you to visualize, cross-filter, and search embeddings and metadata.

superpc • Rank 13.6 • Science 59%

Supervised Principal Components

qsvaR • Rank 13.6 • Science 59%

Quality Surrogate Variable Analysis for Degradation Correction