GitHub
sars-cov-2-genomics
Course materials for an introduction to SARS-CoV-2 sequencing data analysis
https://github.com/dmdequin/skills-copilot-codespaces-vscode
My clone repository
ti-1-pmg-cc-m-20241-g10-fake-news
ti-1-pmg-cc-m-20241-g10-fake-news created by GitHub Classroom
shotgun-gutfish-prjna1254096
Shotgun metagenomic analysis of fish gut microbiota from PRJNA1254096 using Kraken2, Bracken, and R.
aws-ssm-with-least-privilege-users-on-ec2s
Using pre-defined users on EC2s with AWS SSM for least privilege SSH
https://github.com/dmdequin/airbnb_price_predict
Machine Learning and NLP to predict Airbnb prices
dssurvival2bookdown
A bookdown demonstrating how to build survival models using the dsSurvival 2.0 package in DataSHIELD
youthvars
Classes, methods and functions for variables commonly used in youth mental health datasets
trelpy
TRELPy is a toolbox to evaluate system-level guarantees for safety critical systems
eye-tracking-tools-influence
Replication package, supplementary materials, and analysis pipeline for our ESEM'24 study.
hyperspectral-soilmoisture-dataset
Hyperspectral and soil-moisture data from a field campaign based on a soil sample. Karlsruhe (Germany), 2017.
https://github.com/dmdequin/msisdn-app-api
A web API in Python using Django with a basic front end where users can search the database. The project was done using DevOps tools and methodologies.
animal-health-surveillance-tool
An R-based tool for planning and evaluating surveillance programmes for animal diseases in Switzerland
credit-risk-explainability
Credit Risk Explainability is an open-source implementation of the research paper: "An Explainable AI Framework for Credit Evaluation and Analysis" (Applied Soft Computing Journal, 2024).
data-quality-for-everyone
Lesson website for data quality for everyone (Carpentries training)
sitator
Unsupervised landmark analysis for jump detection in molecular dynamics simulations.
plateviewer
Renders HTS microscopy image data into a Minerva Story for visual review
iowa-vietnam
Showcasing everyday Iowans during the Vietnam War -from protests to everyday life- to Iowan soldiers away from home. This collection displays a wide array of items, giving a voice to Iowans at this time.
racs
RACS: Rapid Analysis of ChIP-Seq data for contig based genomes -- repository
shorebirdcollective
Code pipeline and document templates used by the Shorebird Science and Conservation Collective
https://github.com/dmentipl/improver
IMPROVER is a library of algorithms for meteorological post-processing.
aws-cfn-preset-resource-reservations
Using CloudFormation Mappings to define preset cpu, memory or instance types for rightsizing infrastructure
https://github.com/dmentipl/dmentipl.github.io
Personal website and blog of Daniel Mentiplay (@dmentipl)
https://github.com/airscripts/kuma
A simple Docker Compose implementation of famous Uptime Kuma.
https://github.com/ait-assistive-autonomous-systems/3d_nonrigid_tricubic_pointcloud_registration
Non-rigid ICP-like point cloud registration algorithm using piece-wise tricubic polynomials as transformation model.
https://github.com/dmentipl/cocktails
Cocktails collected by Daniel Mentiplay (@dmentipl)
nakedape
♪♫sell heart. suitable for all ages. not always suitable for all creeds. essentially by definition. arses' cracked though. https://www.youtube.com/watch?v=NjvwWiCYLl4
simulated-selfhood-llms
Code and data for the behavioral evaluation of introspective coherence in LLMs.
https://github.com/aliceo2group/aliceo2
O2 software project for the ALICE experiment at CERN
https://github.com/alleninstitute/mies
Multichannel Igor Electrophysiology Suite
https://github.com/dmentipl/multigrain
A smoothed particle hydrodynamics algorithm for multigrain dust with separate sets of particles
