GitHub
QuartetNetworkGoodnessFit
julia package for phylogenetic networks analyses using 4-taxon subsets.
clamswrangler-web
Web version of CLAMS Wrangler. Built using Django and bootstrap.
dacapo
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
@stdlib/random-strided-bernoulli
Fill a strided array with pseudorandom numbers drawn from a Bernoulli distribution.
fairly_random
Data and code for Fairly Random: The Effect of Winning the Toss on Winning the Match. Journal of Sports Analytics. 2023.
qc-b3db
A large benchmark dataset, Blood-Brain Barrier Database (B3DB), complied from 50 published resources.
et-ai-hybrid
Assistente de Revisões Científicas Híbrido - Resumos Inteligentes e Geração de Citações com IA.
hpxcl
This repository contains components that will support percolation via OpenCL and CUDA
spice
Photon mapping with python wrapper (Spectral Photon Interception in Controlled Environment)
arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
FiniteMPS
A julia package for finite MPS/MPO-based computations of ground-state, finite-temperature and dynamical properties.
https://github.com/ivis-at-bilkent/cytoscape.js-clipboard
A Cytoscape.js extension to provide copy-paste utilities
pia-mpc
Code to reproduce the paper "MPC with Publicly Identifiable Abort from Pseudorandomness and Homomorphic Encryption".
lang-tuv
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Turkana language
lang-bak
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Bashkir language
https://github.com/ivis-at-bilkent/sybvals
SyBValS: Systems Biology Validation Service
photonic_sim
This is a collection of methods for simulating 1D photonic structures
nlp4re-tools
List and classification of existing NLP4RE tools, as well as replication package for the NLP4RE tools book chapter.
veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
https://github.com/ivis-at-bilkent/cytosnap
A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer
carpentrycon-skill-up-3-lesson-example
Lesson Example for Contributing on GitHub talk during CarpentryCon
https://github.com/ivis-at-bilkent/cd2sbgnml-webservice
An easily deployable small webservice to translate CellDesigner-SBGN-ML files with cd2sbgnml
oliver-mcmanamay_2025_scidata
A thematically consistent LULCC system for the conterminous United States adaptable to multiple MSD frameworks at a regional level. Using empirically derived spatial products, a series of contemporary base maps at a 30-m resolution were developed that support flexibility and interchangeability amongst multiple land classification systems.
aminonaut
Software to identify and analyse nullomer peptides from UniProt data
https://github.com/ivis-at-bilkent/even
even: a tool to compare, edit, and synchronously lay out two or more networks...
stats-incr-nanskewness
Compute a corrected sample skewness incrementally, ignoring NaN values.
paper-halve-cost-of-addition
Halving the cost of quantum addition (among other things)
tulip
Tulip is a per unit length multiconductor transmission line and in-cell parameters solver
JointEnergyModels
A package for Joint Energy Models and Energy-Based Models in Julia.
adversarialrobustness.jl
An adversarial machine learning toolkit for Flux.jl neural networks
https://github.com/ivis-at-bilkent/cytoscape.js-qtip
A Cytoscape.js extension that wraps the QTip jQuery library
msgnn
Official code for the LoG2022 paper -- MSGNN: A Spectral Graph Neural Network Based on a Novel Magnetic Signed Laplacian.
scenery_builder
Model-to-model transformation of floorplan models to execution artefacts (including ROS simulation)
fwl-calliope
An equilibrium model for interior-atmosphere volatile partitioning on lava planets
https://github.com/ivis-at-bilkent/cytoscape.js-chola
Orthogonal layout for graphs with compound nodes
rfsd
The Russian Financial Statements Database (RFSD) is an open, harmonized collection of annual unconsolidated financial statements of the universe of Russian firms in 2011-2023. It is the first open data set with information on every active firm in the country, including non-filing firms.
https://github.com/ivis-at-bilkent/chilay
Chisio Layout (ChiLay) provides a graph layout framework along with a number of layout algorithms implemented in Java. Layout services can be used locally or remotely (through HTTP) from a server.
virtual-cat-programming-language-interpreter
This is a softaware component of the virtual Cross Array Task (CAT) platform that translates user actions, including gesture interactions and arranged visual programming blocks, into executable machine-readable instructions, a formal algorithm specified using the CAT programming language.
halfpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
https://github.com/ivis-at-bilkent/cytoscape.js-c-tsm
Compound-Topology Shape Metrics Approach
generalbfxpkg
An R package for data manipulation of general bioinformatics and clinical data.
https://github.com/ivis-at-bilkent/cytoscape.js-cosep
Compound Spring Embedder with Ports (CoSEP)
elucidatornf
A collection of workflows to stream together tools from within elucidator
https://github.com/ivis-at-bilkent/cose-lat
A tool for animation during CoSE layout to debug and improve the algorithm
autogalaxy_workspace
The PyAutoGalaxy Workspace: contains example scripts, datasets and more
https://github.com/ivis-at-bilkent/chilay.maven-repo
Automatically exported from code.google.com/p/chilay.maven-repo