Bedtoolsr — Peer-reviewed • Rank 6.0 • Science 67%

Bedtoolsr: An R package for genomic data analysis and manipulation - Published in JOSS (2019)

r-intro-geospatial • Rank 9.0 • Science 64%

Introduction to R for Geospatial Data

colrev • Rank 14.0 • Science 59%

CoLRev: An open-source environment for collaborative reviews

differential-privacy-library • Rank 19.0 • Science 54%

Diffprivlib: The IBM Differential Privacy Library

bamtofastq • Rank 6.0 • Science 67%

Converts bam or cram files to fastq format and does quality control.

hydra-floods • Rank 13.9 • Science 59%

HYDrologic Remote sensing Analysis for Floods Python package

microscope • Rank 13.9 • Science 59%

Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.

ROSCO • Rank 13.9 • Science 59%

A Reference Open Source Controller for Wind Turbines

windninja • Rank 8.9 • Science 64%

A diagnostic wind model developed for use in wildland fire modeling.

dmri-commit • Rank 13.9 • Science 59%

Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI

QuadGK • Rank 18.9 • Science 54%

adaptive 1d numerical Gauss–Kronrod integration in Julia

pygsp • Rank 18.9 • Science 54%

Graph Signal Processing in Python

unlimiformer • Rank 8.9 • Science 64%

Public repo for the NeurIPS 2023 paper "Unlimiformer: Long-Range Transformers with Unlimited Length Input"

bio-epidemiology-ner • Rank 5.9 • Science 67%

Recognize bio-medical entities from a text corpus

pyubx2 • Rank 18.9 • Science 54%

Python library for parsing and generating UBX GPS/GNSS protocol messages.

https://github.com/bluebrain/atlas-download-tools • Rank 5.9 • Science 67%

Search, download, and prepare brain atlas data.

simpleitk • Rank 23.9 • Science 49%

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

aspire • Rank 13.9 • Science 59%

Algorithms for Single Particle Reconstruction

blastmining • Rank 5.9 • Science 67%

Mining NCBI BLAST output

opencage • Rank 18.9 • Science 54%

:globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:

bayesim • Rank 10.9 • Science 62%

Bayes for anything!

einops • Rank 28.9 • Science 44%

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

mzcore • Rank 5.9 • Science 67%

A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation

epiregulon • Rank 13.9 • Science 59%

inference of transcription factor activity at the single cell level

gas-reporting • Rank 5.9 • Science 67%

Reference documentation on every gas price API and all the different formats

NRWAL • Rank 13.8 • Science 59%

The National Renewable Energy Laboratory Wind Analysis Libray (NRWAL)

finetuning-scheduler • Rank 13.8 • Science 59%

A PyTorch Lightning extension that accelerates and enhances foundation model experimentation with flexible fine-tuning schedules.

DINCAE • Rank 5.8 • Science 67%

DINCAE (Data-Interpolating Convolutional Auto-Encoder) is a neural network to reconstruct missing data in satellite observations.

GFF3toEMBL — Peer-reviewed • Rank 5.8 • Science 67%

GFF3toEMBL: Preparing annotated assemblies for submission to EMBL - Published in JOSS (2016)

statcanR • Rank 15.8 • Science 57%

R Package to connect to Statistics Canada's open data portal

etrainee • Rank 5.8 • Science 67%

E-learning course on Time Series Analysis in Remote Sensing for Understanding Human-Environment Interactions

datapackager • Rank 13.8 • Science 59%

An R package to enable reproducible data processing, packaging and sharing.

brushnet • Rank 8.8 • Science 64%

[ECCV 2024] The official implementation of paper "BrushNet: A Plug-and-Play Image Inpainting Model with Decomposed Dual-Branch Diffusion"

occnet • Rank 8.8 • Science 64%

[ICCV 2023] OccNet: Scene as Occupancy

Pyinterpolate — Peer-reviewed • Rank 13.8 • Science 59%

Pyinterpolate: Spatial interpolation in Python for point measurements and aggregated datasets - Published in JOSS (2022)

https://github.com/awslabs/gluonts • Rank 26.8 • Science 46%

Probabilistic time series modeling in Python

whatshap • Rank 18.8 • Science 54%

Read-based phasing of genomic variants, also called haplotype assembly

https://github.com/awslabs/open-data-registry • Rank 13.8 • Science 59%

A registry of publicly available datasets on AWS

rascal • Rank 5.8 • Science 67%

Python package to reconstruct and extend observational climate series through empricial downscaling of large-scale models

ModalDecisionTrees • Rank 5.8 • Science 67%

Julia implementation of Modal Decision Trees & Forests, for interpretable classification of spatial and temporal data. Long live Symbolic Learning!!

commonpy • Rank 10.8 • Science 62%

Collection of common Python utility functions and classes used in other Caltech Library programs.

nnSVG • Rank 13.8 • Science 59%

nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data

MutableArithmetics • Rank 15.8 • Science 57%

Interface for arithmetics on mutable types in Julia

g2p • Rank 18.8 • Science 54%

Grapheme-to-Phoneme transductions that preserve input and output indices, and support cross-lingual g2p!

multgee • Rank 13.8 • Science 59%

GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parameterization.

power-grid-model-ds • Rank 5.7 • Science 67%

Data Science toolkit for Power Grid Model

academic-observatory-workflows • Rank 8.7 • Science 64%

Telescopes, Workflows and Data Services for the Academic Observatory

pyrcel • Rank 13.7 • Science 59%

A 0D, adiabatic cloud parcel model for studying aerosol activation.

ArrayInterface • Rank 18.7 • Science 54%

Designs for new Base array interface primitives, used widely through scientific machine learning (SciML) and other organizations

edspdf • Rank 5.7 • Science 67%

EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.

https://github.com/chains-project/bump • Rank 5.7 • Science 67%

A dataset of reproducible breaking dependency updates, SANER 2024 (https://doi.org/10.1109/SANER60148.2024.00024)

python-dts-calibration • Rank 5.7 • Science 67%

A Python package to load raw Distributed Temperature Sensing (DTS) files, perform a calibration, and plot the result.

https://github.com/microsoft/mlos • Rank 13.7 • Science 59%

MLOS is a project to enable autotuning for systems.

plantuml • Rank 28.7 • Science 44%

Generate diagrams from textual description

dtacs • Rank 5.7 • Science 67%

DTACS: Onboard atmospheric correction emulator for S2 and PhiSat

mobilitydcat-ap • Rank 5.7 • Science 67%

Repository of the metadata specification mobilityDCAT-AP

panda-py • Rank 5.7 • Science 67%

Python bindings for real-time control of Franka Emika robots.

how-to-create-a-map-for-print-and-web-using-qgis • Rank 0.7 • Science 72%

QGIS Workshop Material: How to create a basic map for print and web using QGIS

prime-pipeline • Rank 0.7 • Science 72%

An example pipeline that computes metrics of a repository

slicer-timeline • Rank 0.7 • Science 72%

DeepArc 3D Slicer Timeline extension

aizynthfinder • Rank 15.7 • Science 57%

A tool for retrosynthetic planning

phylotreelib • Rank 8.7 • Science 64%

Library for analyzing and manipulating phylogenetic trees

pairtools • Rank 13.7 • Science 59%

Extract 3D contacts (.pairs) from sequencing alignments

pygac • Rank 13.7 • Science 59%

A python package to read and calibrate NOAA and Metop AVHRR GAC and LAC data

chemotion_eln • Rank 10.7 • Science 62%

Electronic Lab Notebook

ugropy • Rank 10.7 • Science 62%

A Python library designed to swiftly and effortlessly obtain the UNIFAC-like groups from molecules by their names and subsequently integrate them into inputs for thermodynamic libraries. UNIFAC, PSRK, Joback, and Abdulelah-Gani models are implemented.

rang • Rank 15.7 • Science 57%

🐶 (Re)constructing R computational environments

differentiationinterface.jl • Rank 18.7 • Science 54%

An interface to various automatic differentiation backends in Julia.

kwandl • Rank 5.7 • Science 67%

Keyword arguments handled

nat • Rank 13.7 • Science 59%

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Roots • Rank 18.7 • Science 54%

Root finding functions for Julia

ames • Rank 10.6 • Science 62%

Automated Metadata Service

code2seq • Rank 8.6 • Science 64%

Code for the model presented in the paper: "code2seq: Generating Sequences from Structured Representations of Code"

pyprobables • Rank 18.6 • Science 54%

Probabilistic data structures in python http://pyprobables.readthedocs.io/en/latest/index.html

netascore • Rank 5.6 • Science 67%

NetAScore - Network Assessment Score Toolbox for Sustainable Mobility

ctmm • Rank 15.6 • Science 57%

Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.

fm128-radar • Rank 5.6 • Science 67%

embedding-atlas • Rank 18.6 • Science 54%

Embedding Atlas is a tool that provides interactive visualizations for large embeddings. It allows you to visualize, cross-filter, and search embeddings and metadata.

superpc • Rank 13.6 • Science 59%

Supervised Principal Components

qsvaR • Rank 13.6 • Science 59%

Quality Surrogate Variable Analysis for Degradation Correction

Pippin — Peer-reviewed • Rank 5.6 • Science 67%

Pippin: A pipeline for supernova cosmology - Published in JOSS (2020)

pyplr • Rank 8.6 • Science 64%

Pupillometry software for EPSRC CVD

chaospy • Rank 18.6 • Science 54%

Chaospy - Toolbox for performing uncertainty quantification.

tum_esm_utils • Rank 7.6 • Science 65%

Python utilities for our research group and beyond

carculator • Rank 5.6 • Science 67%

Prospective environmental and economic life cycle assessment of vehicles made blazing fast.

Lexedata — Peer-reviewed • Rank 5.6 • Science 67%

Lexedata: A toolbox to edit CLDF lexical datasets - Published in JOSS (2022)

pynmeagps • Rank 18.6 • Science 54%

Python library for parsing and generating NMEA 0183 GNSS/GPS protocol messages.

privacy-meter • Rank 13.6 • Science 59%

Privacy Meter: An open-source library to audit data privacy in statistical and machine learning algorithms.

https://github.com/afeinstein20/eleanor • Rank 13.6 • Science 59%

A tool for light curve extraction from the TESS FFIs.

https://github.com/aiidateam/aiida-wannier90-workflows • Rank 13.6 • Science 59%

A collection of advanced automated workflows to compute Wannier functions using AiiDA and the Wannier90 code

mcmicro • Rank 5.6 • Science 67%

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

marlin • Rank 5.6 • Science 67%

[CVPR] MARLIN: Masked Autoencoder for facial video Representation LearnINg

datasketch • Rank 26.6 • Science 46%

MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble and HNSW

polygnn • Rank 5.6 • Science 67%

PolyGNN: Polyhedron-based graph neural network for 3D building reconstruction from point clouds [ISPRS 2024]

heat-desalination • Rank 5.6 • Science 67%

Simulation and optimisation of hybrid electric and thermal powered desalination systems

playground • Rank 18.6 • Science 54%

An open-source library for GPU-accelerated robot learning and sim-to-real transfer.

uavsar-pytools • Rank 8.6 • Science 64%

Python tools to download, convert, and visualize UAVSAR images.

gamma • Rank 13.5 • Science 59%

Dose Rate Estimation from In-Situ Gamma-Ray Spectrometry Measurements

qspool • Rank 5.5 • Science 67%

Dependency-free solution to spool jobs into SLURM scheduler without exceeding queue capacity limits

masci-tools • Rank 13.5 • Science 59%

Post-processing toolkit for electronic structure calculations