cgns • Rank 9.9 • Science 54%

The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. All development work and bug fixes should be based off the 'develop' branch, CGNS uses the branching model Gitflow.

asdf-astropy • Rank 17.9 • Science 46%

This is the extension library for ASDF to provide support for Astropy.

waybackpy • Rank 19.9 • Science 44%

Wayback Machine API interface & a command-line tool

SphericalFunctions • Rank 9.9 • Science 54%

Spherical functions of arbitrary float types

rnasplice • Rank 6.9 • Science 57%

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

invgamma • Rank 14.9 • Science 49%

A light weight package for the dpqr functions for the inverse gamma, inverse chi-squared, and inverse exponential distributions in R

agda-unimath • Rank 9.9 • Science 54%

The agda-unimath library

gemsmith • Rank 19.9 • Science 44%

A command line interface for smithing Ruby gems.

hypertools • Rank 17.9 • Science 46%

A Python toolbox for gaining geometric insights into high-dimensional data

google-meridian • Rank 19.9 • Science 44%

Meridian is an MMM framework that enables advertisers to set up and run their own in-house models.

psy-maps • Rank 9.9 • Science 54%

The psyplot plugin for visualizations on a map

satellighte • Rank 9.9 • Science 54%

📡 PyTorch Lightning Implementations of Recent Satellite Image Classification !

https://github.com/biojulia/twobit.jl • Rank 4.9 • Science 59%

Support for working with 2Bit formatted sequence data files

mdba-gauge-getter • Rank 9.9 • Science 54%

MDBA Gauge Getter provides a unified and simple interface to collect surface water data from Australian national and state water portals..

sar_snowmelt_timing • Rank 4.9 • Science 59%

This repository contains notebooks and tools to identify snowmelt timing using time series analysis of backscatter of Sentinel-1 C-band SAR.

ramachandraw • Rank 9.9 • Science 54%

Ramachandran plotting tool

vformer • Rank 9.9 • Science 54%

A modular PyTorch library for vision transformer models

cwbtools • Rank 9.8 • Science 54%

Tools to create and manage CWB-indexed corpora

arborx • Rank 9.8 • Science 54%

Performance-portable geometric search library

spatialvi • Rank 6.8 • Science 57%

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

zix • Rank 9.8 • Science 54%

Zig, a fork of Nix with the goal to move to Zig.

Mcomp • Rank 14.8 • Science 49%

Data from the M-competitions

sntools — Peer-reviewed • Rank 9.8 • Science 54%

sntools: An event generator for supernova burst neutrinos - Published in JOSS (2021)

wikes-toolkit • Rank 6.8 • Science 57%

a user-friendly toolkit for the Wiki-Entity-Summarization (WikES) project.

https://github.com/cytoscape/cytoscape.js-klay • Rank 17.8 • Science 46%

The Klay layout algorithm for Cytoscape.js

ffcv-pl • Rank 6.8 • Science 57%

[FFCV-PL] manage fast data loading with ffcv and pytorch lightning

GRDzhadzha — Peer-reviewed • Rank 4.8 • Science 59%

GRDzhadzha: A code for evolving relativistic matter on analytic metric backgrounds - Published in JOSS (2024)

glotzerlab_citations • Rank 1.8 • Science 62%

Collection of citations commonly used in papers in the Glotzer group

autoreject • Rank 17.8 • Science 46%

Automated rejection and repair of bad trials/sensors in M/EEG

gwaihir • Rank 6.8 • Science 57%

Repository regarding the Gwaihir GUI used for Bragg Coherent Coherent Diffraction (BCDI) data analysis

track2KBA • Rank 14.8 • Science 49%

An R package that facilitates the identification of animal aggregations of potential conservation significance based on individual tracking data. Key functions include utilities to identify and summarise individual foraging trips, estimate utilisation distributions, and overlay distributions to identify important aggregation areas.

Spine-Toolbox • Rank 14.8 • Science 49%

Spine Toolbox is an open source Python package to manage data, scenarios and workflows for modelling and simulation. You can have your local workflow, but work as a team through version control and SQL databases.

https://github.com/csoneson/alevinqc • Rank 14.8 • Science 49%

Create QC and summary reports for Alevin output

kb-python • Rank 14.7 • Science 49%

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

d3heatmap • Rank 9.7 • Science 54%

d3heatmap is a Python package to create interactive heatmaps based on d3js.

nemo.jl • Rank 9.7 • Science 54%

Julia bindings for the FLINT number theory C library

intervalxt • Rank 4.7 • Science 59%

Interval Exchange Transformations

ultralyticspro • Rank 9.7 • Science 54%

🔥🔥🔥 专注于YOLO11，YOLOv8、TYOLOv12、YOLOv10、RT-DETR、YOLOv7、YOLOv5改进模型，Support to improve backbone, neck, head, loss, IoU, NMS and other modules🚀

thermofeel • Rank 6.7 • Science 57%

thermofeel is a library to calculate human thermal comfort indexes

scanorama • Rank 17.7 • Science 46%

Panoramic stitching of single cell data

cppnumericalsolvers • Rank 9.7 • Science 54%

a lightweight header-only C++17 library of numerical optimization methods for (un-)constrained nonlinear functions and expression templates

Julog • Rank 9.7 • Science 54%

A Julia package for Prolog-style logic programming.

necsim-rust • Rank 4.7 • Science 59%

Spatially explicit biodiversity simulations using a parallel library written in Rust

FerriteViz • Rank 9.7 • Science 54%

Plot your Ferrite.jl data

lidar — Peer-reviewed • Rank 14.7 • Science 49%

lidar: A Python package for delineating nested surface depressions from digital elevation data - Published in JOSS (2021)

extra-boolean • Rank 9.7 • Science 54%

Boolean data type has two possible truth values to represent logic.

manubot • Rank 17.7 • Science 46%

Python utilities for Manubot: Manuscripts, open and automated

cosmicqc • Rank 4.7 • Science 59%

Single cell Morphology Quality Control (coSMicQC)

QuadraticModels • Rank 9.7 • Science 54%

Data structures for linear and quadratic optimization problems based on NLPModels.jl

https://github.com/astrazeneca/kazu • Rank 14.7 • Science 49%

Fast, world class biomedical NER

MicrobiomeProfiler • Rank 14.7 • Science 49%

:microbe: A shiny package for microbiome functional enrichment analysis

LayeredLayouts • Rank 9.7 • Science 54%

Layered Layout Algorithms for Directed Acyclic Graphs

cosraymodifiediso • Rank 6.7 • Science 57%

A Python library for acquiring galactic cosmic ray spectra at Earth from the ISO model as modified by DLR. All the details and equations about this model can be found in Matthiae et al., A ready-to-use galactic cosmic ray model, Advances in Space Research 51.3 (2013): 329-338, https://doi.org/10.1016/j.asr.2012.09.022 .

Cropbox • Rank 6.7 • Science 57%

🌾 declarative crop modeling framework

pyphi • Rank 14.7 • Science 49%

A toolbox for integrated information theory.

debrowser • Rank 17.6 • Science 46%

Differential Count Data Analysis Toolbox

autodistill • Rank 19.6 • Science 44%

Images to inference with no labeling (use foundation models to train supervised models).

hpc-intro • Rank 9.6 • Science 54%

An Introduction to High Performance Computing

phylolm • Rank 17.6 • Science 46%

aeolus • Rank 9.6 • Science 54%

Analysis and visualisation of atmospheric model output powered by iris.

https://github.com/biopragmatics/pyobo • Rank 14.6 • Science 49%

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

rage • Rank 14.6 • Science 49%

R tools for performing ageing focussed analyses using matrix population models.

HIMA • Rank 14.6 • Science 49%

High-dimensional Mediation Analysis (HIMA)

clim-recal • Rank 6.6 • Science 57%

Open repository of methods for recalibrating & bias correcting UKCP18 climate projections data

agent-model-integration • Rank 1.6 • Science 62%

Integration of an Agent Model into an Open Simulation Architecture for Scenario-Based Testing of Automated Vehicles

gitinpractice • Rank 9.6 • Science 54%

📖 An opinionated intermediate/advanced Git book

https://github.com/doi-usgs/loadflex • Rank 6.6 • Science 57%

Models and Tools for Watershed Flux Estimates

https://github.com/yesint/molar • Rank 14.6 • Science 49%

Repository for molar crate and its dependencies

vectorvfs • Rank 9.6 • Science 54%

Your filesystem as a vector database

morl-baselines • Rank 14.6 • Science 49%

Multi-Objective Reinforcement Learning algorithms implementations.

landsatxplore • Rank 14.6 • Science 49%

Search and download Landsat scenes from EarthExplorer.

beautier • Rank 14.6 • Science 49%

R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2

compliance-users • Rank 4.6 • Science 59%

A simple tool for querying CA compliance data

boutiques • Rank 17.6 • Science 46%

A cross-platform descriptive command-line framework for applications

flowkit • Rank 14.6 • Science 49%

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

gridit • Rank 9.6 • Science 54%

Provides spatial tools to translate raster or vector polygon data to regular grids

divbrowse • Rank 6.6 • Science 57%

A web application for interactive visualization and exploratory data analysis of variant call matrices

stellarium • Rank 14.5 • Science 49%

Stellarium is a free GPL software which renders realistic skies in real time with OpenGL. It is available for Linux/Unix, Windows and macOS. With Stellarium, you really see what you can see with your eyes, binoculars or a small telescope.

TargetSearch • Rank 14.5 • Science 49%

R package for the analysis of GC-MS metabolite profiling data. This git repository mirrors the TargetSearch git repository on bioconductor.

deeppurpose • Rank 17.5 • Science 46%

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

octofitterpy • Rank 6.5 • Science 57%

Python wrapper of Octofitter.jl: fast and flexible orbit fitting

reproducibility_in_plant_pathology • Rank 4.5 • Science 59%

A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathology research reproducibility and suggestions for ways to improving it.

dagmc • Rank 9.5 • Science 54%

Direct Accelerated Geometry Monte Carlo Toolkit

matbench • Rank 14.5 • Science 49%

Matbench: Benchmarks for materials science property prediction

ipsframework • Rank 9.5 • Science 54%

Python framework for coupled HPC simulations

basedosdados • Rank 19.5 • Science 44%

⚙️ Código de manutenção do datalake (metadados e pacotes de acesso) | 📖 Docs: https://basedosdados.org/docs/home

cobrexa.jl • Rank 6.5 • Science 57%

Constraint-Based Reconstruction and EXascale Analysis

znvis • Rank 9.5 • Science 54%

A visualisation engine for particle simulations

ECNet — Peer-reviewed • Rank 9.5 • Science 54%

ECNet: Large scale machine learning projects for fuel property prediction - Published in JOSS (2017)

deepxde_copy • Rank 4.4 • Science 59%

presto • Rank 9.4 • Science 54%

Open source pulsar search and analysis toolkit

@stdlib/blas-ext-base-gsumkbn • Rank 6.4 • Science 57%

Calculate the sum of strided array elements using an improved Kahan–Babuška algorithm.

polydedupe • Rank 6.4 • Science 57%

PolyDeDupe: Multi-Lingual Data Deduplication

cspstandsegmentation • Rank 4.4 • Science 59%

R package for single tree delination from TLS/MLS/ULS point clouds

spanner • Rank 4.4 • Science 59%

Utilities to support landscape-, forest-, and tree-related data collection, manipulation, analysis, modelling, and visualization.

https://github.com/antsx/antspymm • Rank 4.4 • Science 59%

utilities for processing modalities beyond T1w

pavo • Rank 14.4 • Science 49%

tools for the analysis of color data in R

spalloc • Rank 9.4 • Science 54%

SpiNNaker machine allocation client.

extra-entries • Rank 9.4 • Science 54%

A collection of functions for operating upon Entries.

gimie • Rank 9.4 • Science 54%

Extract linked metadata from repositories