GitHub
wneq
wneq is a Python package for computing nuclear equilibria in nucleosynthesis.
daedalus
[UNDER DEVELOPMENT] R package implementing the DAEDALUS model for projecting and optimising health, social, and economic costs of a pandemic.
stars-reproduce-johnson-2021
Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.
tread
tread is an R package to extract data from Excel files generated by Tecan Infinite 200 Pro plate readers
sixarm_ruby_sentry
SixArm.com » Ruby » Sentry simple monitorning of URI links, DNS names, etc.
ai-attendance-system
An AI-powered attendance system using YOLOv5 for face detection and recognition.
awesome-arm-in-smart-agriculture
A collection of literature on the use of association rule mining methods in smart agriculture
mlflow-cnn
Galaxy Redshift Estimation Using Convolutional Neural Networks with MLflow Tracking
kernscr
Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks
ipd
R package to perform statistically valid and efficient inference with predicted data (IPD) using state-of-the-art methods.
VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer
VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer - Published in JOSS (2025)
fair_genome_indexer
Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools
prepost
R package for analyzing interactions in survey experiments with priming or post-treatment bias
rbahadur
Efficient simulation of genotype / phenotype data under assortative mating using the Bahadur order-2 multivariate Bernoulli distribution
spatpomp
R package for statistical inference of spatiotemporal partially observed Markov processes
macchiato
Macchiato is a Petri Nets implementation for Python 3 with a focus of usability and scriptability.
access-om2
Deprecated ACCESS-OM2 global ocean - sea ice coupled model code and configurations.
evexplorer
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
tcrm
A statistical-parametric model for assessing wind hazard from tropical cyclones
mumu
C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data
firedpy
A Python Command Line Interface for classifying fire events from the Collection 6 MODIS Burned Area Product.
stochasticvehiclescheduling.jl
Application of InferOpt.jl to the Stochastic Vehicle Scheduling Problem
https://github.com/computationalpsychiatry/physio-examples
Example Data Repository for the TAPAS PhysIO Toolbox. Offers different vendors file formats and corresponding example scripts for the toolbox.
intro-tableau
An introductory lesson on data visualization using Tableau Public. Learners create charts, explore datasets, and build dashboards—no prior experience required.
worldcereal-classification
This repository contains the classification module of the WorldCereal system.
ultralystics-baseline
Based on the official Ultralytics repository, I've added some of my own tricks to serve as a baseline for various comparative experiments in object detection.
lambdanative-and-fdroid
Introduction to building and distributing Android applications
https://github.com/computecanada/magic_castle
Terraform modules to replicate the HPC user experience in the cloud
ccviR
ccviR: an R package and Shiny app to implement the NatureServe Climate Change Vulnerability Index - Published in JOSS (2024)
fuzzy-logic-toolkit
A mostly MATLAB-compatible fuzzy logic toolkit for Octave.
portal-admin
Sistema de gerenciamento de orçamentos, solicitações de serviços, fornecedores e clientes.
spectacoular
Extension module for Acoular for the realization of microphone array GUI applications with minimal programming effort.
pid4cat-model
Handle-based PIDs with a rich LinkML metadata model for resources in catalysis (PID4Cat)
hydropower-fatigue-damage-reduction
Code for EPFL PTMH & SDSC's paired-hydro project
haploidsprucemap
Scripts and data input files for Norway spruce genetic maps from haploid megagametophyte data. Maps and results are presented in Bernhardsson et al. (2018). "An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies) "
plasticparcels
plasticparcels: A python package for marine plastic dispersal simulations and parameterisation development using parcels - Published in JOSS (2024)
diffilqrax
Diffilqrax is an open-source Python library for differentiable iLQR and LQR in JAX
qiskit-serverless
A programming model for leveraging quantum and classical resources
@stdlib/blas-base-transpose-operation-resolve-str
Return the transpose operation string associated with a supported BLAS transpose operation value.
GEOS
GEOS: A performance portable multi-physics simulation framework for subsurface applications - Published in JOSS (2024)
gsea_refiner
A python tool for interpreting pathway enrichment results using NLP techniques.
crocodeel
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
