dualrnaseq • Rank 6.0 • Science 77%

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

scikit-surgeryfred • Rank 6.0 • Science 77%

FRED provides an interactive demonstration of fiducial based registration for teaching purposes

nf-co2footprint • Rank 6.0 • Science 77%

A Nextflow plugin to estimate the CO2 footprint of pipeline runs.

bayesian • Rank 16.0 • Science 67%

Bindings for Bayesian TidyModels

jolideco • Rank 6.0 • Science 77%

A Python package for Poisson joint likelihood deconvolution

gt4sd • Rank 16.0 • Science 67%

GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.

pyprep • Rank 16.0 • Science 67%

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

https://github.com/sdv-dev/sdv • Rank 23.9 • Science 59%

Synthetic data generation for tabular data

jcclass • Rank 5.9 • Science 77%

Automated gridded version of the Jenkinson-Collison classification.

wetterdienst • Rank 18.9 • Science 64%

Open weather data for humans.

s2spy • Rank 5.9 • Science 77%

A high-level python package integrating expert knowledge and artificial intelligence to boost (sub) seasonal forecasting

Transits • Rank 5.9 • Science 77%

Flexible photometric transit curves with limb darkening

micrometaapp-react • Rank 5.9 • Science 77%

This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!

otter-grader • Rank 18.9 • Science 64%

A Python and R autograding solution

https://github.com/astropy/pytest-remotedata • Rank 23.9 • Science 59%

Pytest plugin to control whether tests are run that have remote data

learn2learn • Rank 18.9 • Science 64%

A PyTorch Library for Meta-learning Research

aviary-models • Rank 5.9 • Science 77%

The Wren sits on its Roost in the Aviary.

llama_index • Rank 33.9 • Science 49%

LlamaIndex is the leading framework for building LLM-powered agents over your data.

rad • Rank 15.9 • Science 67%

Nancy Grace Roman Space Telescope shared attributes for processing and archive

newt • Rank 7.8 • Science 75%

A web application to visualize and edit pathway models

xcms • Rank 23.8 • Science 59%

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

mass-tools • Rank 15.8 • Science 67%

Various projects dealing with molecular formula

susi • Rank 5.8 • Science 77%

SuSi: Python package for unsupervised, supervised and semi-supervised self-organizing maps (SOM)

neurokit2 • Rank 23.8 • Science 59%

NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing

ml-spectra-processing • Rank 18.8 • Science 64%

Various methods to help spectra processing

sisl • Rank 15.8 • Science 67%

Electronic structure Python package for post analysis and large scale tight-binding DFT/NEGF calculations

obspy • Rank 23.8 • Science 59%

ObsPy: A Python Toolbox for seismology/seismological observatories.

Chemiscope — Peer-reviewed • Rank 15.8 • Science 67%

Chemiscope: interactive structure-property explorer for materials and molecules - Published in JOSS (2020)

wrapyfi • Rank 5.8 • Science 77%

Robotics MOM and RPC middleware wrapper with deep-learning framework integration

mbuild • Rank 15.8 • Science 67%

A hierarchical, component based molecule builder

galore-torch • Rank 18.8 • Science 64%

GaLore: Memory-Efficient LLM Training by Gradient Low-Rank Projection

torchfl • Rank 5.8 • Science 77%

A Python library for rapid prototyping, experimenting, and logging of federated learning using state-of-the-art models and datasets. Built using PyTorch and PyTorch Lightning.

uqpy • Rank 15.8 • Science 67%

UQpy (Uncertainty Quantification with python) is a general purpose Python toolbox for modeling uncertainty in physical and mathematical systems.

mmrotate • Rank 18.8 • Science 64%

OpenMMLab Rotated Object Detection Toolbox and Benchmark

segul • Rank 15.8 • Science 67%

An ultrafast and memory efficient tool for phylogenomics

kglab • Rank 15.8 • Science 67%

Graph Data Science: an abstraction layer in Python for building knowledge graphs, integrated with popular graph libraries – atop Pandas, NetworkX, RAPIDS, RDFlib, pySHACL, PyVis, morph-kgc, pslpython, pyarrow, etc.

pytest-cases • Rank 23.8 • Science 59%

Separate test code from test cases in pytest.

mip • Rank 5.7 • Science 77%

Model intercomparison visualization package

kpp • Rank 5.7 • Science 77%

The KPP kinetic preprocessor is a software tool that assists the computer simulation of chemical kinetic systems

cellfinder • Rank 15.7 • Science 67%

Automated 3D cell detection in very large images

speziaccount • Rank 5.7 • Science 77%

The Spezi Account module to enable login and signup functionality

deepflash2 • Rank 5.7 • Science 77%

A deep-learning pipeline for segmentation of ambiguous microscopic images.

farm-haystack • Rank 28.7 • Science 54%

AI orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.

atomec • Rank 5.7 • Science 77%

Python-based average-atom code for simulations of high energy density phenomena such as in warm dense matter.

reflame • Rank 5.7 • Science 77%

reflame: Revolutionizing Functional Link Neural Network by Metaheuristic Optimization

nlpo3 • Rank 15.7 • Science 67%

Thai natural language processing library in Rust, with Python and Node bindings.

spezihealthkit • Rank 5.7 • Science 77%

HealthKit module of the Stanford Spezi framework

lg4x-v2 • Rank 5.7 • Science 77%

A graphical user interface of Python lmfit package was developed for standard X-ray photoemission spectroscopy (XPS) curve fitting analysis. The interface streamlines the fitting procedures for validating results and their consistency.

cryptopt • Rank 5.7 • Science 77%

CryptOpt: Verified Compilation with Randomized Program Search for Cryptographic Primitives

fritap • Rank 15.7 • Science 67%

Simplifying SSL/TLS traffic analysis for researchers by making SSL decryption effortless.

tensorpac • Rank 15.7 • Science 67%

Phase-Amplitude Coupling under Python

blp • Rank 15.7 • Science 67%

Pythonic interface for Bloomberg Open API

cf-python • Rank 15.7 • Science 67%

A CF-compliant Earth Science data analysis library

catalogbuilder • Rank 5.7 • Science 77%

CatalogBuilder for data discovery and analysis

Multitaper • Rank 5.7 • Science 77%

A Julia package for frequency domain analysis of time series

Galore — Peer-reviewed • Rank 5.6 • Science 77%

Galore: Broadening and weighting for simulation of photoelectron spectroscopy - Published in JOSS (2018)

spanishoddata • Rank 5.6 • Science 77%

Access national high-quality and open-access datasets on movement patterns derived from mobile telephone datasets / Accede y usa datos nacionales abiertos sobre movimientos basados en teléfonos móviles.

pyart • Rank 23.6 • Science 59%

The Python-ARM Radar Toolkit. A data model driven interactive toolkit for working with weather radar data.

mo-gymnasium • Rank 15.6 • Science 67%

Multi-objective Gymnasium environments for reinforcement learning

https://github.com/metatensor/metatrain • Rank 15.6 • Science 67%

Training and evaluating machine learning models for atomistic systems.

mpitrampoline • Rank 5.6 • Science 77%

A forwarding MPI implementation that can use any other MPI implementation via an MPI ABI

ecodata • Rank 5.6 • Science 77%

fortls • Rank 18.6 • Science 64%

fortls - Fortran Language Server

dbdipy • Rank 5.6 • Science 77%

A Python library for the inspection, curation and interpretation of DBDI-MS data.

wildrtrax • Rank 5.6 • Science 77%

This is an R package that enables environmental sensor users to create comprehensive work flows for managing and analyzing data

holidays • Rank 33.6 • Science 49%

Open World Holidays Framework

qha • Rank 5.6 • Science 77%

A Python package for calculating thermodynamic properties under quasi-harmonic approximation, using data from ab-initio calculations

attrs • Rank 36.6 • Science 46%

Python Classes Without Boilerplate

socbed • Rank 5.6 • Science 77%

A Self-Contained Open-Source Cyberattack Experimentation Testbed

yacrd • Rank 15.6 • Science 67%

Yet Another Chimeric Read Detector

gocart • Rank 5.5 • Science 77%

Collect and Convert Multimessenger Skymaps

lvlspy • Rank 5.5 • Science 77%

A python package developed to handle quantum levels which can act as a basis for larger simulations

https://github.com/alleninstitute/bmtk • Rank 15.5 • Science 67%

Brain Modeling Toolkit

https://github.com/stfc/psyclone • Rank 15.5 • Science 67%

PSyclone is a source-to-source Fortran compiler designed to programmatically optimise, parallelise and instrument HPC applications via user-provided transformation scripts.

galah • Rank 15.5 • Science 67%

More scalable dereplication for metagenome assembled genomes

pytorch-frame • Rank 18.5 • Science 64%

Tabular Deep Learning Library for PyTorch

frouros • Rank 15.5 • Science 67%

Frouros: an open-source Python library for drift detection in machine learning systems.

habitat • Rank 5.5 • Science 77%

🔮 Execution time predictions for deep neural network training iterations across different GPUs.

componentsjs • Rank 18.5 • Science 64%

🧩 A semantic dependency injection framework

aaftf • Rank 5.5 • Science 77%

Automatic Assembly For The Fungi

proxtorch • Rank 5.5 • Science 77%

An efficient GPU-compatible library built on PyTorch, offering a wide range of proximal operators and constraints for optimization and machine learning tasks.

pdbeccdutils • Rank 15.5 • Science 67%

A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

metapep • Rank 5.5 • Science 77%

From metagenomes to epitopes and beyond

tb-variant-filter • Rank 5.5 • Science 77%

A tool for filtering VCF files (relative to M. tuberculosis H37Rv)

Desalination and brine treatment systems integrated modelling framework — Peer-reviewed • Rank 5.5 • Science 77%

Desalination and brine treatment systems integrated modelling framework: simulation and evaluation of water and resource recovery - Published in JOSS (2024)

lexicalrichness • Rank 15.5 • Science 67%

:smile_cat: :speech_balloon: A module to compute textual lexical richness (aka lexical diversity).

egu22pygmt • Rank 5.5 • Science 77%

Crafting beautiful maps with PyGMT at EGU22

letta_api • Rank 18.4 • Science 64%

Letta is the platform for building stateful agents: open AI with advanced memory that can learn and self-improve over time.

rebench • Rank 15.4 • Science 67%

Execute and document benchmarks reproducibly.

geemap — Peer-reviewed • Rank 23.4 • Science 59%

geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)

rdtools • Rank 15.4 • Science 67%

PV Analysis Tools in Python

geovista • Rank 15.4 • Science 67%

Cartographic rendering and mesh analytics powered by PyVista 🌍

pillow • Rank 36.4 • Science 46%

Python Imaging Library (Fork)

fiducia • Rank 7.4 • Science 75%

An open source package for DANTE signal analysis using the cubic spline unfold method.

mlx • Rank 28.4 • Science 54%

MLX: An array framework for Apple silicon

quaternionic • Rank 15.4 • Science 67%

Interpret numpy arrays as quaternionic arrays with numba acceleration

gap-lesson • Rank 5.3 • Science 77%

Programming with GAP

at3d • Rank 5.3 • Science 77%

Retrieves 3D cloud properties from multi-angle images of reflected solar radiation

py3dep • Rank 15.3 • Science 67%

A part of HyRiver software stack for getting topography data within the US through 3D Elevation Program (3DEP)

@cloudflare/zkp-ecdsa • Rank 15.3 • Science 67%

Proves knowledge of an ECDSA-P256 signature under one of many public keys that are stored in a list.