GitHub
graphg
GraphGen: Enhancing Supervised Fine-Tuning for LLMs with Knowledge-Driven Synthetic Data Generation
citation-explorer
Python file to calculate a cumulative citation numbers using InspireHEP API
jax-grid-search
A distributed grid search library for JAX that allows for discrete optimization. This tool lets you explore a parameter space by evaluating an objective function across a grid of values. The search is run in parallel, and the library handles batching, progress tracking, and aggregating results.
wallspray
Data repository created for experiments on waves impacting a vertical wall
radiometry
Reproducible and automated processing and analysis of (synchrotron) radiometry data based on the ASpecD framework
enduring-sound
A collection of antique, semi-antique, and vintage instruments, as well as modern reissuances of classic models. These instruments were all acquired in a used condition, and some have been modified by previous or current owners.
constructional-equivalence
Repository of supplementary materials and RStudio project for the paper on corpus-based approach to measuring constructional equivalence.
socialgene
Python package for creating and interacting with graph databases of protein domains and their genome coordinates
kabr-tools
Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.
math-base-special-modff
Decompose a single-precision floating-point number into integral and fractional parts.
asaca-automatic-speech-analysis-for-cognitive-assessment
The automatic system that can extract PRAAT-like speech features from raw speech wav files, and also can get low WER (<10) high quality transcriptions at the same time.
madym_cxx
Mirror of Madym C++ toolkit project on Manchester QBI GitLab - see https://gitlab.com/manchester_qbi/manchester_qbi_public/madym_cxx
eudirscms
Python3 Implementation of Euclidean and Directional Subspace Constrained Mean Shift (SCMS) Algorithm
vectormagnet
Repository of the design files and simulation code for a vector magnet.
https://github.com/ampliconsuite/ampliconclassifier
Classify output of AmpliconArchitect to detect types of focal amplifications present
filtercavity
Repository for the design of an optical filter cavity developed in the GroeblacherLab at Delft University of Technology.
acutelines.datatoolbox
This package can be used to work with data extracted from the Acutelines data- and biobank. It provides tools to parse data extracts and perform calculations in a uniform matter.
topdesk-synthetic-data
A tool to generate dummy data to simulate TOPdesk ticket data exports.
16s_nbk
A Nextflow pipeline to classify bacteria based on 16S genes sequenced with ONTs native barcoding kit
reproducible-research
Reproducible research - Preparing code to be usable by you and others in the future
stats-strided-smeanli
Calculate the arithmetic mean of a single-precision floating-point strided array using a one-pass trial mean algorithm.
@stdlib/random-array-triangular
Create an array containing pseudorandom numbers drawn from a triangular distribution.
ncmanager-help
Documentation and help for the Neighborhood Council Management System.
CircSeqAlignTk
An R package for end-to-end analysis of RNA-seq data for circular genome
https://github.com/evamart/trimal-meta
Trimal metadata for development of Software Management Wizard importer.
ke-rcnn
KE-RCNN: unifying knowledge based reasoning into part-level attribute parsing (TCYB 2022)
tread
tread is an R package to extract data from Excel files generated by Tecan Infinite 200 Pro plate readers
kernscr
Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks
ipd
R package to perform statistically valid and efficient inference with predicted data (IPD) using state-of-the-art methods.
prepost
R package for analyzing interactions in survey experiments with priming or post-treatment bias
rbahadur
Efficient simulation of genotype / phenotype data under assortative mating using the Bahadur order-2 multivariate Bernoulli distribution
spatpomp
R package for statistical inference of spatiotemporal partially observed Markov processes
access-om2
Deprecated ACCESS-OM2 global ocean - sea ice coupled model code and configurations.
tcrm
A statistical-parametric model for assessing wind hazard from tropical cyclones
firedpy
A Python Command Line Interface for classifying fire events from the Collection 6 MODIS Burned Area Product.
https://github.com/computationalpsychiatry/physio-examples
Example Data Repository for the TAPAS PhysIO Toolbox. Offers different vendors file formats and corresponding example scripts for the toolbox.
worldcereal-classification
This repository contains the classification module of the WorldCereal system.
https://github.com/computecanada/magic_castle
Terraform modules to replicate the HPC user experience in the cloud
ccviR
ccviR: an R package and Shiny app to implement the NatureServe Climate Change Vulnerability Index - Published in JOSS (2024)
plasticparcels
plasticparcels: A python package for marine plastic dispersal simulations and parameterisation development using parcels - Published in JOSS (2024)
GEOS
GEOS: A performance portable multi-physics simulation framework for subsurface applications - Published in JOSS (2024)
MicroFloatingPoints.jl
MicroFloatingPoints.jl: providing very small IEEE 754-compliant floating-point types - Published in JOSS (2024)
QUPS
QUPS: A MATLAB Toolbox for Rapid Prototyping of Ultrasound Beamforming and Imaging Techniques - Published in JOSS (2024)
dsmmR
dsmmR: Estimation and Simulation of Drifting Semi-Markov Models - Published in JOSS (2024)