GitHub
base-repo
Basic repository service used as central component of the KIT DM 2.0 infrastructure.
annogesic
ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
litstudy
LitStudy: Using the power of Python to automate scientific literature analysis from the comfort of a Jupyter notebook
tensorcircuit-ng
The next-gen tensor network based quantum software framework: superseding the original TensorCircuit
locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
catd_snakemake
Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets
deepxde
A library for scientific machine learning and physics-informed learning
eht-imaging
Imaging, analysis, and simulation software for radio interferometry
assist
ASSIST is a software package for ephemeris-quality integrations of test particles.
statsmodels
Statsmodels: statistical modeling and econometrics in Python
hypatia.jl
interior point solver for general convex conic optimization problems
llnl-thicket
conda
A system-level, binary package and environment manager running on all major operating systems and platforms.
robotkube
Orchestrating Large-Scale Cooperative Multi-Robot Systems with Kubernetes and ROS
mss
A QT application, a OGC web map server, a collaboration server to plan atmospheric research flights.
qc-procrustes
Python library for finding the optimal transformation(s) that makes two matrices as close as possible to each other.
iga
IGA is the InvenioRDM GitHub Archiver, a standalone program as well as a GitHub Action that lets you automatically archive GitHub software releases in an InvenioRDM repository.
pysdc
pySDC is a Python implementation of the spectral deferred correction (SDC) approach and its flavors, esp. the multilevel extension MLSDC and PFASST.
pytextrank
Python implementation of TextRank algorithms ("textgraphs") for phrase extraction
epiparameter
R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases
calphy
A Python library and command line interface for automated free energy calculations
albumentations
Fast and flexible image augmentation library. Paper about the library: https://www.mdpi.com/2078-2489/11/2/125
torch-pme
Particle-mesh based calculations of long-range interactions in PyTorch
proglearn
NeuroData's package for exploring and using progressive learning algorithms
gdal
GDAL is an open source MIT licensed translator library for raster and vector geospatial data formats.
https://github.com/hpcaitech/colossalai
Making large AI models cheaper, faster and more accessible
pyoptas
OpTaS: An optimization-based task specification library for trajectory optimization and model predictive control.
onnx2tf
Self-Created Tools to convert ONNX files (NCHW) to TensorFlow/TFLite/Keras format (NHWC). The purpose of this tool is to solve the massive Transpose extrapolation problem in onnx-tensorflow (onnx-tf). I don't need a Star, but give me a pull request.
STUMPY
STUMPY: A Powerful and Scalable Python Library for Time Series Data Mining - Published in JOSS (2019)
nrel-sup3r
The Super-Resolution for Renewable Resource Data (sup3r) software uses generative adversarial networks to create synthetic high-resolution wind and solar spatiotemporal data from coarse low-resolution inputs.
spyglass-neuro
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
selfie
An educational software system of a tiny self-compiling C compiler, a tiny self-executing RISC-V emulator, and a tiny self-hosting RISC-V hypervisor.
cadet-process
A Framework for Modelling and Optimizing Advanced Chromatographic Processes
rbaps
R implementation of the BAPS software for Bayesian Analysis of Population Structure
citations
Citation manager support for GAP. This helps with citations for reports, papers, data, and presentations!
gnss-lib-py
Modular Python tool for parsing, analyzing, and visualizing Global Navigation Satellite Systems (GNSS) data and state estimates
stepcount
Improved Step Counting via Foundation Models for Wrist-Worn Accelerometers
pyaca
Python scripts accompanying the book "An Introduction to Audio Content Analysis" (www.AudioContentAnalysis.org)
exchange
Description of the WHP (CCHDO) Exchange Format for CTD/Hydrographic Data
road2citygml3
Guideline for modelling roads and the streetspace within semantic 3D city models using the international OGC standard City Geography Markup Language (CityGML) version 3.0.
GenX
GenX: a configurable power system capacity expansion model for studying low-carbon energy futures. More details at : https://genx.mit.edu
pytorch-lightning
Pretrain, finetune ANY AI model of ANY size on multiple GPUs, TPUs with zero code changes.
Gviz
This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
cvnn
Library to help implement a complex-valued neural network (cvnn) using tensorflow as back-end
pygwalker
PyGWalker: Turn your dataframe into an interactive UI for visual analysis
alchemiscale
a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home
pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
sourcespec
Earthquake source parameters from P- and S-wave displacement spectra
iris
A powerful, format-agnostic, and community-driven Python package for analysing and visualising Earth science data
skforecast
Time series forecasting with machine learning models
pyscope
pyscope is a pure-Python package for control of small robotic telescopes.
