GitHub
biobb_wf_haddock
This tutorials aim to illustrate the process of protein-protein docking, step by step, using HADDOCK with the BioExcel Building Blocks library (biobb).
https://github.com/gscholze/pyprotocol
Custom network protocol implementation for Computer Networks Laboratory at PUCRS 25/1.
number-int32-base-muldw
Compute the double word product of two signed 32-bit integers.
castep-fmtvis
A Python-based visualisation tool using PyVista to visualised formatted grid data from CASTEP (and possibly other electronic structure codes).
androidmeda
LLM tool to deobfuscate android app and find any potential vulnerabilities in android apps and code.
https://github.com/grycap/cloudkeeper
EGI AppDB <-> CMF synchronization utility
https://github.com/grycap/deepaas
DEEP as a Service API for machine learning models
valor_agregado_bruto_largo_plazo_argentina
Serie anual de Valor Agregado Bruto a precios básicos en pesos constantes de 2004 (1895-actualidad).
hydromachine
HydroMachine Toolbox is a basin morphometry automation tool developed for GIS software (for now, ArcGIS). Contact: topsakalmstf@gmail.com Paper: https://doi.org/10.1007/s12665-025-12352-8
postmodern_generator
This repository contains the source code for The Postmodern Generator, a tool designed to generate text that mimics the style of academic postmodern criticism. It offers customizable and extensible text generation features without relying on large language models.
https://github.com/icecube/he-sterile-8year-data-release
Digital data release for "An eV-scale sterile neutrino search using eight years of atmospheric muon neutrino data from the IceCube Neutrino Observatory"
cfr
R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
https://github.com/grycap/ansible-role-weave
Ansible Role to install weave net
pytorch360convert
PyTorch based image conversions between equirectangular, cubemap, and perspective. Based on py360convert
pyclustree
A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
desrist25-p-l-f-d
This is the repository containing the transcripts and video files for the paper presented at the DESRIST25 conference.
MultilayerGraphs.jl
MultilayerGraphs.jl: Multilayer Network Science in Julia - Published in JOSS (2023)
bayesian_optimization_python
Repository for Bayesian Optimization with a small surrogate model library in Python
@stdlib/array-zero-to
Generate a linearly spaced numeric array whose elements increment by 1 starting from zero.
alembica
Open science package for LLM-powered semantic synthesis and precise extraction of information from unstructured texts.
nipoppy
Lightweight framework for neuroimaging-clinical data organization/processing
ontolearner
OntoLearner: A Modular Python Library for Ontology Learning with LLMs https://pypi.org/project/OntoLearner/
EchoFlow: End-to-end self-supervised sonar-image pipeline
EchoFlow: End-to-end self-supervised sonar-image pipeline - Published in JOSS (2026)
gradiend
GRADIEND: Monosemantic Feature Learning within Neural Networks Applied to Gender Debiasing of Transformer Models
https://github.com/jboynyc/birankr
CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks).
lucene-cranfield-search-engine
🔍 A Lucene demo for searching the Cranfield collection.（用于搜索Cranfield数据集的Lucene搜索引擎示例。）
histoc
histoc: Histocompatibility analysis performed by kidney allocation systems - Published in JOSS (2022)
thesis
Heat transfer code utilizing a nondimensionalized semi-analytic solution to moving heat sources with a 3D Gaussian power density
flexlmm
Flexible linear mixed model framework for Genome Wide Association Studies
pmv-ads-2023-1-e2-proj-int-t7-your-money
pmv-ads-2023-1-e2-proj-int-t7-your-money created by GitHub Classroom
specfit
Python code to perform Bayesian fitting of polynomial models for radio spectra
btllib
btllib: A C++ library with Python interface for efficient genomic sequence processing - Published in JOSS (2022)
enso-nic
Ensō is a high-performance streaming interface for NIC-application communication.
@stdlib/random-array-uniform
Create an array containing pseudorandom numbers drawn from a continuous uniform distribution.
spinshuttling.jl
Simulate the correlated stochastic noise in multiple-spin shuttling problem.
cessda.cmv.server
Web interface and REST API for the CESSDA Metadata Validator
mcplot
A Python package with a plotting class and routines for publication-ready graphics
functional-analysis-and-pdes
Solving PDEs using weak formulations and functional analysis (Lax-Milgram, drift-diffusion)
terraform-aws-self-registration-infrastructure-pattern
Splitting infrastructure between multiple modules for self-registration
aws-cfn-using-outputs-from-terraform
Using CloudFormation Stacks with only outputs to manage dependency constraints with Terraform
GHEtool
GHEtool: An open-source tool for borefield sizing in Python - Published in JOSS (2022)
Accelerating Parallel Operation for Compacting Selected Elements on GPUs
Accelerating Parallel Operation for Compacting Selected Elements on GPUs - Published in JOSS (2022)
anthrodisturbance_dataprep
This is a data preparation module to harmonize different athropogenic disturbance datasets. It's primarily intended for the Northwest Territories region (default), but the structure is universal. All needed to do is provide the metadata information required by the `disturbanceDT` object and it generated the list (general category) of lists (specific class) needed for generating disturbance layer
chromatix
Differentiable wave optics using JAX! Documentation can be found at https://chromatix.readthedocs.io
scarproject
Quantum many-body simulations with PXP, Rydberg chains, Schrieffer-Wolff corrections, and constrained subspace analysis.
NeuralFieldEq.jl
NeuralFieldEq.jl: A flexible solver to compute Neural Field Equations in several scenarios - Published in JOSS (2022)