simoptlib • Rank 11.2 • Science 77%

A testbed of simulation-optimization problems and solvers

vitessce • Rank 21.2 • Science 67%

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

jurassic • Rank 3.2 • Science 85%

The Juelich Rapid Spectral Simulation Code (JURASSIC) is a fast infrared radiative transfer model for the analysis of atmospheric remote sensing measurements.

dorotos • Rank 3.2 • Science 85%

Tooling Suite for Containerized ROS Applications

replay-trajectory-classification • Rank 11.2 • Science 77%

State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data

ml-fcnnls • Rank 11.2 • Science 77%

Fast Combinatorial Non-negative Least Squares

examples • Rank 11.1 • Science 77%

A collection of TLA⁺ specifications of varying complexities.

konrad • Rank 11.1 • Science 77%

Implementation of a radiative-convective equilibrium model.

pinocchio • Rank 24.1 • Science 64%

A fast and flexible implementation of Rigid Body Dynamics algorithms and their analytical derivatives

brkraw • Rank 11.1 • Science 77%

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

tantivy • Rank 34.1 • Science 54%

Tantivy is a full-text search engine library inspired by Apache Lucene and written in Rust

awesome-dataset-distillation • Rank 11.1 • Science 77%

A curated list of awesome papers on dataset distillation and related applications.

IncrementalInference • Rank 11.1 • Science 77%

Clique recycling non-Gaussian (multi-modal) factor graph solver; also see Caesar.jl.

cubids • Rank 11.0 • Science 77%

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

pyrcs • Rank 11.0 • Science 77%

PyRCS: An open-source tool for collecting railway codes used in different UK rail industry systems

OptimalControl • Rank 11.0 • Science 77%

Model and solve optimal control problems in Julia, both on CPU and GPU.

prime • Rank 3.0 • Science 85%

A complete installer for PRIME

synopsis • Rank 3.0 • Science 85%

Science Yield improvemeNt via Onboard Prioritization and Summary of Information System (SYNOPSIS)

binchicken • Rank 11.0 • Science 77%

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

gravity-toolkit • Rank 11.0 • Science 77%

Python tools for working time-variable gravity fields

lightly • Rank 24.0 • Science 64%

A python library for self-supervised learning on images.

fundamentals • Rank 10.9 • Science 77%

Some project setup tools including logging, settings and database connections

spectre • Rank 10.9 • Science 77%

SpECTRE is a code for multi-scale, multi-physics problems in astrophysics and gravitational physics.

alibi • Rank 20.9 • Science 67%

Algorithms for explaining machine learning models

oolong — Peer-reviewed • Rank 10.9 • Science 77%

oolong: An R package for validating automated content analysis tools - Published in JOSS (2020)

simulated-bifurcation • Rank 10.9 • Science 77%

Python CPU/GPU implementation of the Simulated Bifurcation (SB) algorithm to solve quadratic optimization problems (QUBO, Ising, TSP, optimal asset allocations for a portfolio, etc.).

permamodel • Rank 10.9 • Science 77%

Permafrost models with a Basic Model Interface

pyhdx • Rank 10.9 • Science 77%

Derive ΔG for single residues from HDX-MS data

labscript-suite • Rank 10.8 • Science 77%

Metapackage for the 𝘭𝘢𝘣𝘴𝘤𝘳𝘪𝘱𝘵 𝘴𝘶𝘪𝘵𝘦 experiment control and automation system

aslprep • Rank 10.8 • Science 77%

Preprocessing of arterial spin labeling (ASL) data

NLPModelsModifiers • Rank 10.8 • Science 77%

nano-qmflows • Rank 10.8 • Science 77%

Package containing several workflows to compute molecular properties for nanomaterials

prime-commits • Rank 2.8 • Science 85%

PRIME module to extract commits from VCS

evoturb • Rank 2.8 • Science 85%

4D wind field generator

runtest • Rank 10.8 • Science 77%

:clapper: Numerically tolerant end-to-end test library for research software.

qubekit • Rank 10.8 • Science 77%

Quantum Mechanical Bespoke Force Field Derivation Toolkit

perses • Rank 10.8 • Science 77%

Experiments with expanded ensembles to explore chemical space

penquins • Rank 10.8 • Science 77%

A python client for Kowalski

fave • Rank 10.8 • Science 77%

A repository for maintaing the fave-align and fave-extract toolkits

caltechdata-api • Rank 12.7 • Science 75%

Python library for using the CaltechDATA API

pyskani • Rank 10.7 • Science 77%

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

QuantumCumulants • Rank 10.7 • Science 77%

Generalized mean-field equations in open quantum systems

embed • Rank 20.7 • Science 67%

Infinity is a high-throughput, low-latency serving engine for text-embeddings, reranking models, clip, clap and colpali

signature-lens • Rank 23.7 • Science 64%

YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

CausalInference • Rank 10.7 • Science 77%

Causal inference, graphical models and structure learning in Julia

rosomaxa • Rank 20.7 • Science 67%

A Vehicle Routing Problem solver

wam2layers • Rank 10.7 • Science 77%

Atmospheric moisture tracking

bibtexautocomplete • Rank 10.6 • Science 77%

Python package to autocomplete bibtex bibliographies

libsodium • Rank 33.6 • Science 54%

A modern, portable, easy to use crypto library.

chrono • Rank 33.6 • Science 54%

Date and time library for Rust

litgpt • Rank 23.6 • Science 64%

20+ high-performance LLMs with recipes to pretrain, finetune and deploy at scale.

silence • Rank 10.6 • Science 77%

A framework for deploying RESTful APIs and web applications

itensors.jl • Rank 10.5 • Science 77%

A Julia library for efficient tensor computations and tensor network calculations. ITensors.jl is supported by the Simons Foundation's Flatiron Institute.

Caesar • Rank 10.5 • Science 77%

Robust robotic localization and mapping, together with NavAbility(TM). Reach out to info@wherewhen.ai for help.

panstamps • Rank 10.5 • Science 77%

A CL-Util to download stacked and/or warp image stamps from the STScI PanSTARRS image server

deepsensor • Rank 12.5 • Science 75%

A Python package for tackling diverse environmental prediction tasks with NPs.

smif • Rank 10.5 • Science 77%

Simulation Modelling Integration Framework

perun • Rank 12.5 • Science 75%

Perun is a Python package that measures the energy consumption of your applications.

networkanalysis-ts • Rank 10.5 • Science 77%

TypeScript port of the Java networkanalysis package that provides data structures and algorithms for network analysis.

respR • Rank 10.5 • Science 77%

respR - Analyse, convert, and automate respirometry-related and time-series data

decode • Rank 12.5 • Science 75%

:zap: DESHIMA code for data analysis

BestieTemplate • Rank 10.5 • Science 77%

Template for Julia Programming Language packages using the copier engine.

lm-eval • Rank 28.4 • Science 59%

A framework for few-shot evaluation of language models.

neutralocean • Rank 10.4 • Science 77%

Calculate neutral surfaces in the ocean, using Python

graphein • Rank 10.4 • Science 77%

Protein Graph Library

bolognese • Rank 20.4 • Science 67%

Ruby gem and command-line utility for conversion of DOI metadata

kartograf • Rank 10.4 • Science 77%

This package contains tools for setting up hybrid-topology FE calculations

lumin • Rank 10.4 • Science 77%

LUMIN - a deep learning and data science ecosystem for high-energy physics.

manticore • Rank 23.4 • Science 64%

Symbolic execution tool

tidalpy • Rank 10.4 • Science 77%

Software suite to perform solid-body tidal dissipation calculations for rocky and icy worlds

mujoco_mpc • Rank 10.4 • Science 77%

Real-time behaviour synthesis with MuJoCo, using Predictive Control

epydemic • Rank 10.3 • Science 77%

Epidemic processes on networks in Python

pymoten • Rank 10.3 • Science 77%

Motion energy features from video

dockstore • Rank 10.3 • Science 77%

An app store for scientific workflows, tools, notebooks, and services

https://github.com/mir-group/allegro • Rank 20.3 • Science 67%

Allegro is an open-source code for building highly scalable and accurate equivariant deep learning interatomic potentials

pyfastani • Rank 10.3 • Science 77%

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pmp-library • Rank 10.3 • Science 77%

The Polygon Mesh Processing Library

dpgen • Rank 10.3 • Science 77%

The deep potential generator to generate a deep-learning based model of interatomic potential energy and force field

asdf • Rank 23.2 • Science 64%

ASDF (Advanced Scientific Data Format) is a next generation interchange format for scientific data

transformers • Rank 10.2 • Science 77%

gget • Rank 20.2 • Science 67%

🧬 gget enables efficient querying of genomic reference databases

https://github.com/aspuru-guzik-group/selfies • Rank 20.2 • Science 67%

Robust representation of semantically constrained graphs, in particular for molecules in chemistry

com.tdunning:t-digest • Rank 33.2 • Science 54%

A new data structure for accurate on-line accumulation of rank-based statistics such as quantiles and trimmed means

mtress • Rank 10.2 • Science 77%

@uwdata/mosaic-core • Rank 22.2 • Science 65%

An extensible framework for linking databases and interactive views.

awesome-implicit-nerf-robotics • Rank 10.2 • Science 77%

A comprehensive list of Implicit Representations and NeRF papers relating to Robotics/RL domain, including papers, codes, and related websites

PencilArrays • Rank 10.1 • Science 77%

Distributed Julia arrays using the MPI protocol

yaib • Rank 10.1 • Science 77%

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

mmpretrain • Rank 23.1 • Science 64%

OpenMMLab Pre-training Toolbox and Benchmark

pycuda • Rank 23.1 • Science 64%

CUDA integration for Python, plus shiny features

difftastic • Rank 33.1 • Science 54%

a structural diff that understands syntax 🟥🟩

auto-sklearn • Rank 23.1 • Science 64%

Automated Machine Learning with scikit-learn

AlgebraicPetri • Rank 10.1 • Science 77%

Build Petri net models compositionally

flashrank • Rank 20.1 • Science 67%

Lite & Super-fast re-ranking for your search & retrieval pipelines. Supports SoTA Listwise and Pairwise reranking based on LLMs and cross-encoders and more. Created by Prithivi Da, open for PRs & Collaborations.

xarray-einstats • Rank 20.1 • Science 67%

Stats, linear algebra and einops for xarray

openff-interchange • Rank 10.0 • Science 77%

A project (and object) for storing, manipulating, and converting molecular mechanics data.

gunrock • Rank 10.0 • Science 77%

Programmable CUDA/C++ GPU Graph Analytics

pyopencl • Rank 23.0 • Science 64%

OpenCL integration for Python, plus shiny features

iscore • Rank 10.0 • Science 77%

iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

macsyfinder • Rank 12.0 • Science 75%

MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.