robotkube • Rank 4.3 • Science 85%

Orchestrating Large-Scale Cooperative Multi-Robot Systems with Kubernetes and ROS

tensorwaves • Rank 12.3 • Science 77%

Python fitter package for multiple computational back-ends

skada • Rank 12.3 • Science 77%

Domain adaptation toolbox compatible with scikit-learn and pytorch

pyhmmer • Rank 22.3 • Science 67%

Cython bindings and Python interface to HMMER3.

mss • Rank 12.3 • Science 77%

A QT application, a OGC web map server, a collaboration server to plan atmospheric research flights.

fastcrypto • Rank 22.3 • Science 67%

Common cryptographic library used in software at Mysten Labs.

qc-procrustes • Rank 12.3 • Science 77%

Python library for finding the optimal transformation(s) that makes two matrices as close as possible to each other.

gbd-tools • Rank 12.3 • Science 77%

Management of Benchmark Instances and Instance Attributes

kitsune • Rank 4.2 • Science 85%

Kitsune is a next-generation data steward and harmonization tool.

iga • Rank 4.2 • Science 85%

IGA is the InvenioRDM GitHub Archiver, a standalone program as well as a GitHub Action that lets you automatically archive GitHub software releases in an InvenioRDM repository.

pysdc • Rank 12.2 • Science 77%

pySDC is a Python implementation of the spectral deferred correction (SDC) approach and its flavors, esp. the multilevel extension MLSDC and PFASST.

pytextrank • Rank 22.2 • Science 67%

Python implementation of TextRank algorithms ("textgraphs") for phrase extraction

epiparameter • Rank 12.2 • Science 77%

R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

calphy • Rank 12.2 • Science 77%

A Python library and command line interface for automated free energy calculations

SumOfSquares • Rank 12.2 • Science 77%

Sum of Squares Programming for Julia

albumentations • Rank 30.2 • Science 59%

Fast and flexible image augmentation library. Paper about the library: https://www.mdpi.com/2078-2489/11/2/125

pylipd • Rank 12.2 • Science 77%

Development repository for Python LiPD utilities

torch-pme • Rank 14.2 • Science 75%

Particle-mesh based calculations of long-range interactions in PyTorch

proglearn • Rank 12.2 • Science 77%

NeuroData's package for exploring and using progressive learning algorithms

gdal • Rank 30.1 • Science 59%

GDAL is an open source MIT licensed translator library for raster and vector geospatial data formats.

https://github.com/hpcaitech/colossalai • Rank 30.1 • Science 59%

Making large AI models cheaper, faster and more accessible

llview • Rank 4.1 • Science 85%

HPC Monitoring Tool

imaris_extensions • Rank 4.1 • Science 85%

Algorithmic and Utility Extensions for the Imaris Program

pyoptas • Rank 12.1 • Science 77%

OpTaS: An optimization-based task specification library for trajectory optimization and model predictive control.

onnx2tf • Rank 22.1 • Science 67%

Self-Created Tools to convert ONNX files (NCHW) to TensorFlow/TFLite/Keras format (NHWC). The purpose of this tool is to solve the massive Transpose extrapolation problem in onnx-tensorflow (onnx-tf). I don't need a Star, but give me a pull request.

STUMPY — Peer-reviewed • Rank 12.1 • Science 77%

STUMPY: A Powerful and Scalable Python Library for Time Series Data Mining - Published in JOSS (2019)

rJavaEnv • Rank 12.1 • Science 77%

Java Environments for R Projects

nrel-sup3r • Rank 12.1 • Science 77%

The Super-Resolution for Renewable Resource Data (sup3r) software uses generative adversarial networks to create synthetic high-resolution wind and solar spatiotemporal data from coarse low-resolution inputs.

input4mips_cvs • Rank 4.0 • Science 85%

Controlled Vocabularies (CVs) for use in input4MIPs

spyglass-neuro • Rank 14.0 • Science 75%

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

nf-core • Rank 22.0 • Science 67%

Python package with helper tools for the nf-core community.

selfie • Rank 12.0 • Science 77%

An educational software system of a tiny self-compiling C compiler, a tiny self-executing RISC-V emulator, and a tiny self-hosting RISC-V hypervisor.

cadet-process • Rank 12.0 • Science 77%

A Framework for Modelling and Optimizing Advanced Chromatographic Processes

rbaps • Rank 4.0 • Science 85%

R implementation of the BAPS software for Bayesian Analysis of Population Structure

citations • Rank 4.0 • Science 85%

Citation manager support for GAP. This helps with citations for reports, papers, data, and presentations!

gnss-lib-py • Rank 14.0 • Science 75%

Modular Python tool for parsing, analyzing, and visualizing Global Navigation Satellite Systems (GNSS) data and state estimates

cutadapt • Rank 22.0 • Science 67%

Cutadapt removes adapter sequences from sequencing reads

NGLess • Rank 13.9 • Science 75%

NGLess: NGS with less work

patsy • Rank 29.9 • Science 59%

Describing statistical models in Python using symbolic formulas

stepcount • Rank 11.9 • Science 77%

Improved Step Counting via Foundation Models for Wrist-Worn Accelerometers

pyaca • Rank 11.9 • Science 77%

Python scripts accompanying the book "An Introduction to Audio Content Analysis" (www.AudioContentAnalysis.org)

instamatic • Rank 11.9 • Science 77%

Python program for automated electron diffraction data collection

exchange • Rank 3.9 • Science 85%

Description of the WHP (CCHDO) Exchange Format for CTD/Hydrographic Data

road2citygml3 • Rank 3.8 • Science 85%

Guideline for modelling roads and the streetspace within semantic 3D city models using the international OGC standard City Geography Markup Language (CityGML) version 3.0.

GenX • Rank 11.8 • Science 77%

GenX: a configurable power system capacity expansion model for studying low-carbon energy futures. More details at : https://genx.mit.edu

gufe • Rank 11.8 • Science 77%

core data models of the Open Free Energy ecosystem

tbss • Rank 3.8 • Science 85%

Tract based spatial statistics using ANTs and FSL

pytorch-lightning • Rank 34.8 • Science 54%

Pretrain, finetune ANY AI model of ANY size on multiple GPUs, TPUs with zero code changes.

ewatercycle • Rank 11.8 • Science 77%

Python package for running hydrological models

WatchMe — Peer-reviewed • Rank 11.8 • Science 77%

WatchMe: Software for Reproducible Monitoring and Data Collection - Published in JOSS (2019)

brian2cuda • Rank 11.8 • Science 77%

A brian2 extension to simulate spiking neural networks on GPUs

pyschism • Rank 11.8 • Science 77%

Python interface for handling the SCHISM model.

ARCHModels • Rank 11.7 • Science 77%

A Julia package for estimating ARMA-GARCH models.

Gviz • Rank 21.7 • Science 67%

This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.

cvnn • Rank 11.7 • Science 77%

Library to help implement a complex-valued neural network (cvnn) using tensorflow as back-end

chemplot • Rank 11.7 • Science 77%

A python package for chemical space visualization.

pygwalker • Rank 24.6 • Science 64%

PyGWalker: Turn your dataframe into an interactive UI for visual analysis

HSL • Rank 11.6 • Science 77%

Julia interface to the HSL Mathematical Software Library

alchemiscale • Rank 11.6 • Science 77%

a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home

legend-daq2lh5 • Rank 11.6 • Science 77%

Convert digitizer data to LEGEND HDF5

ants • Rank 11.6 • Science 77%

Advanced Normalization Tools (ANTs)

fenicsprecice • Rank 11.6 • Science 77%

preCICE-adapter for the open source computing platform FEniCS

joblib • Rank 34.6 • Science 54%

Computing with Python functions.

pathway-mapper • Rank 13.6 • Science 75%

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

pdataviewer • Rank 3.6 • Science 85%

Parkinsons Disease cohort landscape visualization

weldx • Rank 11.6 • Science 77%

The welding data exchange format

dexp • Rank 11.5 • Science 77%

Dataset EXploration & Processing

datalad-xnat • Rank 11.5 • Science 77%

Track XNAT projects with DataLad

sourcespec • Rank 11.5 • Science 77%

Earthquake source parameters from P- and S-wave displacement spectra

iris • Rank 11.5 • Science 77%

A powerful, format-agnostic, and community-driven Python package for analysing and visualising Earth science data

OptimizationProblems • Rank 11.5 • Science 77%

Optimization Problems for Julia

pedpy • Rank 11.5 • Science 77%

Analysis of pedestrian dynamics based on trajectory files.

r.pops.spread • Rank 3.5 • Science 85%

r.pops.spread - PoPS model implemented as a GRASS GIS module

skforecast • Rank 21.5 • Science 67%

Time series forecasting with machine learning models

SnpArrays • Rank 11.5 • Science 77%

Compressed storage for SNP data

pyscope • Rank 11.4 • Science 77%

pyscope is a pure-Python package for control of small robotic telescopes.

nushell • Rank 34.4 • Science 54%

A new type of shell

gpm-api • Rank 11.4 • Science 77%

A python package to download and analyze the Global Precipitation Measurement Mission (GPM) data archive

@citation-js/cli • Rank 21.4 • Science 67%

Core functionality of Citation.js, as well as the original plugins (CSL, BibTeX, RIS, DOI, Wikidata, and BibJSON)

faker • Rank 34.4 • Science 54%

Faker is a Python package that generates fake data for you.

mici • Rank 11.4 • Science 77%

Manifold Markov chain Monte Carlo methods in Python

librosa • Rank 29.4 • Science 59%

Python library for audio and music analysis

bambi • Rank 21.4 • Science 67%

BAyesian Model-Building Interface (Bambi) in Python.

plastics-prototype • Rank 3.4 • Science 85%

Decision support tool for plastics policy.

qub-sherlock • Rank 11.4 • Science 77%

The QUB Transient Classifier

chart-studio • Rank 34.4 • Science 54%

The interactive graphing library for Python :sparkles:

KeemenaPreprocessing.jl: Unicode-Robust Cleaning, Multi-Level Tokenisation & Streaming Offset Bundling for Julia NLP • Rank 1.4 • Science 87%

KeemenaPreprocessing.jl: Unicode-Robust Cleaning, Multi-Level Tokenisation & Streaming Offset Bundling for Julia NLP - Published in JOSS (2026)

AutoFunc — Peer-reviewed • Rank 1.4 • Science 87%

AutoFunc: A Python package for automating and verifying functional modeling - Published in JOSS (2021)

colpali-engine • Rank 21.4 • Science 67%

The code used to train and run inference with the ColVision models, e.g. ColPali, ColQwen2, and ColSmol.

astrodb_utils • Rank 11.4 • Science 77%

radionets • Rank 11.3 • Science 77%

Imaging radio interferometric data with Neural Networks.

acropolis-edge • Rank 3.3 • Science 85%

terragpu • Rank 3.3 • Science 85%

Python library to process and classify remote sensing imagery by means of GPUs and ML.

glass • Rank 11.3 • Science 77%

Generator for Large Scale Structure

org.pytorch:torchvision_ops • Rank 34.3 • Science 54%

Datasets, Transforms and Models specific to Computer Vision

pyerrors • Rank 11.3 • Science 77%

Error propagation and statistical analysis for Monte Carlo simulations in lattice QCD and statistical mechanics using autograd.

SolverCore • Rank 11.3 • Science 77%

sktime • Rank 29.3 • Science 59%

A unified framework for machine learning with time series

cytoscape-node-editing • Rank 13.3 • Science 75%

A Cytoscape.js extension to provide grapples to resize nodes

r-ecology-lesson • Rank 11.2 • Science 77%

Data Analysis and Visualization in R for Ecologists