segregation • Rank 10.8 • Science 57%

R package to calculate entropy-based segregation indices, with a focus on the Mutual Information Index (M) and Theil’s Information Index (H)

version_gem • Rank 23.8 • Science 44%

🔖 Enhance that VERSION! Sugar for boring Version modules

sumo — Peer-reviewed • Rank 8.8 • Science 59%

sumo: Command-line tools for plotting and analysis of periodic *ab initio* calculations - Published in JOSS (2018)

libpysal • Rank 21.8 • Science 46%

Core components of Python Spatial Analysis Library

upkie • Rank 13.8 • Science 54%

Open-source wheeled biped robots

delly2 • Rank 8.8 • Science 59%

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

docker-ros-ml-images • Rank 5.8 • Science 62%

Machine Learning-Enabled ROS Docker Images

binlets • Rank 10.7 • Science 57%

Denoising via adaptive binning.

fair-test • Rank 5.7 • Science 62%

☑️ A library to build and deploy FAIR metrics tests APIs that can be used by FAIR evaluation services supporting the FAIRMetrics specifications, such as FAIR enough and the FAIR evaluator.

datatools • Rank 5.7 • Science 62%

A set of tools for working with JSON, CSV and Excel workbooks

stdpopsim • Rank 18.7 • Science 49%

A library of standard population genetic models

fitdistrplus • Rank 18.7 • Science 49%

Help to Fit of a Parametric Distribution to Non-Censored or Censored Data

pynauty • Rank 13.7 • Science 54%

Isomorphism testing and automorphisms of graphs

mulimgviewer • Rank 13.7 • Science 54%

MulimgViewer is a multi-image viewer that can open multiple images in one interface, which is convenient for image comparison and image stitching.

bevo_iaq • Rank 5.7 • Science 62%

BEVO Beacon with more robust air quality monitoring

Rfast • Rank 18.7 • Science 49%

A collection of Rfast functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. Note 2: Do not have matrices or vectors with have missing data (i.e NAs). We do no check about them and C++ internally transforms them into zeros (0), so you may get wrong results. Note 3: In general, make sure you give the correct input, in order to get the correct output. We do no checks and this is one of the many reasons we are fast.

stream-learn • Rank 10.7 • Science 57%

The stream-learn is an open-source Python library for difficult data stream analysis.

https://github.com/cans-world/cans • Rank 8.7 • Science 59%

A code for fast, massively-parallel direct numerical simulations (DNS) of canonical flows

wiki-entity-summarization-preprocessor • Rank 0.7 • Science 67%

Convert Wikidata and Wikipedia raw files to filterable formats with a focus of marking Wikidata as summaries based on their Wikipedia abstracts.

competing-representations-shape-evidence-accumulation • Rank 0.7 • Science 67%

Human and sim. behavioral / small-scale neural data for paper: https://www.biorxiv.org/content/10.1101/2022.10.03.510668v2

visually_significant_cataract • Rank 0.7 • Science 67%

subtitle-word-frequencies • Rank 0.7 • Science 67%

Analyse word frequencies from webVTT subtitles

paper-nestedner-icdar23-code • Rank 0.7 • Science 67%

All the material (code, dataset, results) of our Benchmark of Nested NER approaches accepted at ICDAR 2023

who-owns-mass • Rank 0.7 • Science 67%

Documentation and parent module for Who Owns Massachusetts.

template-repo-data-analysis • Rank 0.7 • Science 67%

Reusable, project-oriented data analysis template designed to align with the FAIR principles. The template offers a structured and scalable approach for managing scientific data and code, particularly suited for collaborative and open science environments.

green-value-chains • Rank 0.7 • Science 67%

Research software used for techno-economic analysis of the impact of global heterogeneity of renewable energy supply on heavy industrial production and green value chains

s-disco • Rank 0.7 • Science 67%

S-Disco - stellar discovery app

timingafs • Rank 0.7 • Science 67%

Framework for projecting the timing of frequency amplifications of extreme sea levels

synthpred • Rank 0.7 • Science 67%

A Julia package for synthetic data analysis, advanced imputation (ARIMA, RNN), AutoML, and ensemble modeling.

noisy-sentences-dataset • Rank 0.7 • Science 67%

550K sentences in 5 European languages augmented with noise for training and evaluating spell correction tools or machine learning models.

https://github.com/acdh-oeaw/histogis-data • Rank 0.7 • Science 67%

Data created by HistoGIS

randomize-apps-otree • Rank 0.7 • Science 67%

Fix to randomize apps in oTree >= 5.4.0

comparative_ml_analysis_bioinformatics • Rank 0.7 • Science 67%

A comprehensive analysis of gene expression data using machine learning techniques in Python and R, focusing on predictive modeling and data visualization

pest-risk-decision • Rank 0.7 • Science 67%

Code for our paper "Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture"

coloringbook-utils • Rank 0.7 • Science 67%

storage-ring-gravitational-wave-observatory • Rank 0.7 • Science 67%

Simulating the detection of millihertz (mHz) gravitational waves (GWs) from astrophysical sources by a Storage Ring Gravitational-wave Observatory (SRGO).

savannacorridors • Rank 0.7 • Science 67%

Analysis of palaeoecological records across South-East Asia to determine the evidence for regime shifts between open savannas and dense tropical forests occurred since the Last Glacial Maximum

https://github.com/coganlab/cross_patient_speech_decoding • Rank 0.7 • Science 67%

Cross-patient speech decoding on neural data aligned to a shared latent space

random-streams-mt19937 • Rank 0.7 • Science 67%

Create a readable stream for a 32-bit Mersenne Twister pseudorandom number generator.

waveglow-cli • Rank 0.7 • Science 67%

Command-line interface (CLI) to train WaveGlow using .wav files.

superhighwaysspreadmodel • Rank 0.7 • Science 67%

‘Superhighways’ of human movement in Sahul combined with a demographic cellular automaton

shellbedcondensator • Rank 0.7 • Science 67%

Shiny app visualizing the effects of sedimentary condensation

graph-csr-openmp • Rank 0.7 • Science 67%

Design of high-performance OpenMP-based parallel Graph Edgelist and Compressed Sparse Row (CSR) loader, aka GVEL.

radsel • Rank 0.7 • Science 67%

Radius selection using kernel density estimation for the computation of nonlinear measures

ccbs-study-3 • Rank 0.7 • Science 67%

Does Adolescent and Adult Training Impact Canine Behavior Outcomes?

swift-dependabotscan-test3 • Rank 0.7 • Science 67%

swift-dependabotscan-test3

openmc-plasma-source • Rank 10.7 • Science 57%

Creates a plasma source as an openmc.source object from input parameters that describe the plasma

Integrated hydrologic model development and postprocessing for GSFLOW using pyGSFLOW — Peer-reviewed • Rank 8.7 • Science 59%

Integrated hydrologic model development and postprocessing for GSFLOW using pyGSFLOW - Published in JOSS (2022)

edtools • Rank 8.7 • Science 59%

Collection of tools for automated processing and clustering of electron diffraction data

muscat • Rank 18.7 • Science 49%

Multi-sample multi-group scRNA-seq analysis tools

https://github.com/bluebrain/brayns • Rank 13.7 • Science 54%

Visualizer for large-scale and interactive ray-tracing of neurons

AtomsBase • Rank 13.6 • Science 54%

A Julian abstract interface for atomic structures.

pylith • Rank 8.6 • Science 59%

PyLith is a finite element code for the solution of dynamic and quasi-static tectonic deformation problems.

rustc-dev-guide • Rank 13.6 • Science 54%

A guide to how rustc works and how to contribute to it.

ode-test-problems • Rank 5.6 • Science 62%

A MATLAB suite of initial value problems

rGREAT • Rank 18.6 • Science 49%

GREAT Analysis - Functional Enrichment on Genomic Regions

Preconditioners • Rank 10.6 • Science 57%

A few preconditioners for iterative solvers.

birdie • Rank 8.6 • Science 59%

Bayesian Instrumental Regression for Disparity Estimation

knn-transformers • Rank 5.6 • Science 62%

PyTorch + HuggingFace code for RetoMaton: "Neuro-Symbolic Language Modeling with Automaton-augmented Retrieval" (ICML 2022), including an implementation of kNN-LM and kNN-MT

CCBlade.jl • Rank 10.6 • Science 57%

Blade Element Momentum Method for Propellers and Turbines

iea-15-240-rwt • Rank 8.6 • Science 59%

15MW reference wind turbine repository developed in conjunction with IEA Wind

chuanhuchatgpt • Rank 13.6 • Science 54%

GUI for ChatGPT API and many LLMs. Supports agents, file-based QA, GPT finetuning and query with web search. All with a neat UI.

cooltools • Rank 8.6 • Science 59%

The tools for your .cool's

quippy • Rank 18.6 • Science 49%

libAtoms/QUIP molecular dynamics framework: https://libatoms.github.io

Cubature • Rank 13.6 • Science 54%

One- and multi-dimensional adaptive integration routines for the Julia language

2019-06-19-serc • Rank 5.6 • Science 62%

auto-fox • Rank 8.6 • Science 59%

A library for analyzing potential energy surfaces (PESs) and using the resulting PES descriptors for constructing forcefield parameters.

apread • Rank 10.6 • Science 57%

Python package for reading catmanAP binary files.

diffrg • Rank 3.6 • Science 64%

The Discretization Framework for functional Renormalization Group flows

vega-plus • Rank 8.6 • Science 59%

Make Vega charts of large datasets

markovjunior • Rank 10.6 • Science 57%

Probabilistic language based on pattern matching and constraint propagation, 153 examples

caldera • Rank 13.6 • Science 54%

Automated Adversary Emulation Platform

Diart — Peer-reviewed • Rank 18.6 • Science 49%

Diart: A Python Library for Real-Time Speaker Diarization - Published in JOSS (2024)

fplanck • Rank 8.6 • Science 59%

Numerically solve the Fokker-Planck equation in N dimensions

logisim-evolution • Rank 13.6 • Science 54%

Digital logic design tool and simulator

gsee • Rank 10.6 • Science 57%

GSEE: Global Solar Energy Estimator

xemc3 • Rank 8.5 • Science 59%

A library for working with EMC3 simulations using the xarray framework.

shiny • Rank 23.5 • Science 44%

Shiny for Python

circlator • Rank 13.5 • Science 54%

A tool to circularize genome assemblies

pyjams • Rank 8.5 • Science 59%

A general Python package with miscellaneous utility functions used in several other packages.

https://github.com/broadinstitute/tensorqtl • Rank 13.5 • Science 54%

Ultrafast GPU-enabled QTL mapper

navix • Rank 13.5 • Science 54%

Accelerated minigrid environments with JAX

git-fame • Rank 18.5 • Science 49%

:star: Pretty-print `git` repository collaborators sorted by contributions

PureCN • Rank 18.5 • Science 49%

Copy number calling and variant classification using targeted short read sequencing

https://github.com/fgnt/padertorch • Rank 13.5 • Science 54%

A collection of common functionality to simplify the design, training and evaluation of machine learning models based on pytorch with an emphasis on speech processing.

@stdlib/random-base-poisson • Rank 10.5 • Science 57%

Poisson distributed random numbers.

mattersim • Rank 21.5 • Science 46%

MatterSim: A deep learning atomistic model across elements, temperatures and pressures.

@stdlib/random-base-box-muller • Rank 10.5 • Science 57%

Normally distributed pseudorandom numbers using the Box-Muller transform.

compas • Rank 21.5 • Science 46%

Main library of the COMPAS framework and CAD integrations for Rhino/GH and Blender.

spherical • Rank 13.5 • Science 54%

Evaluate and transform D matrices, 3-j symbols, and (scalar or spin-weighted) spherical harmonics

oceanmesh2d • Rank 8.5 • Science 59%

A two-dimensional triangular mesh generator with pre- and post-processing utilities written in pure MATLAB (no toolboxes required) designed specifically to build models that solve shallow-water equations or wave equations in a coastal environment (ADCIRC, FVCOM, WaveWatch3, SWAN, SCHISM, Telemac, etc.).

seriation • Rank 18.4 • Science 49%

Infrastructure for Ordering using Seriation - R Package

urban-and-regional-planning-resources • Rank 8.4 • Science 59%

Community list of data & technology resources concerning the built environment and communities. 🏙️🌳🚌🚦🗺️

ismn • Rank 13.4 • Science 54%

Readers for the data from the International Soil Moisture Network

odis-arch • Rank 8.4 • Science 59%

Development of the Ocean Data and Information System (ODIS) architecture

@stdlib/random-base-gamma • Rank 10.4 • Science 57%

Gamma distributed pseudorandom numbers.

@stdlib/random-base-hypergeometric • Rank 10.4 • Science 57%

Hypergeometric distributed pseudorandom numbers.

molplotly • Rank 13.4 • Science 54%

add-on to plotly which show molecule images on mouseover!

linemap • Rank 5.4 • Science 62%

Create maps made of (ridge) lines

phables • Rank 10.4 • Science 57%

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes