https://github.com/brsynth/retropath2-wrapper • Rank 7.1 • Science 59%

Python wrapper for Retropath2.0 Knime workflow

gpdps.jl • Rank 2.1 • Science 64%

Generalized primal-dual proximal splitting

situatedsoundscaping • Rank 2.1 • Science 64%

Derivations and experiments of the "A Bayesian Modeling Approach to Situated Design of Personalized Soundscaping Algorithms" paper, published in the MDPI journal of Applied Sciences in the special issue on AI, Machine Learning and Deep Learning in Signal Processing, 2021.

science.aist • Rank 2.1 • Science 64%

Autogenerated model of the xes standard

openhaystack • Rank 12.1 • Science 54%

Build your own 'AirTags' 🏷 today! Framework for tracking personal Bluetooth devices via Apple's massive Find My network.

saferith • Rank 22.1 • Science 44%

Constant time big numbers for Go

dfa • Rank 12.1 • Science 54%

A simple python implementation of a DFA.

flt • Rank 12.0 • Science 54%

Fast Legendre transform for NumPy and JAX

qnorm • Rank 12.0 • Science 54%

Fast-ish (and correct!) quantile normalization in Python.

inferelator • Rank 12.0 • Science 54%

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

sos • Rank 20.0 • Science 46%

SoS workflow system for daily data analysis

https://github.com/facebookresearch/habitat-lab • Rank 20.0 • Science 46%

A modular high-level library to train embodied AI agents across a variety of tasks and environments.

flowsa • Rank 7.0 • Science 59%

Library that attributes resource use, waste, emissions, and loss to economic sectors

matchmsextras • Rank 9.0 • Science 57%

additional network analysis functions for matchms

geo-sam • Rank 7.0 • Science 59%

A QGIS plugin tool using Segment Anything Model (SAM) to accelerate segmenting or delineating landforms in geospatial raster images.

plant • Rank 7.0 • Science 59%

Trait-Driven Models of Ecology and Evolution :evergreen_tree:

basicsr • Rank 12.0 • Science 54%

Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, BasicVSR, SwinIR, ECBSR, etc. Also support StyleGAN2, DFDNet.

balloon-learning-environment • Rank 12.0 • Science 54%

The Balloon Learning Environment - flying stratospheric balloons with deep reinforcement learning.

https://github.com/compomics/compomics-utilities • Rank 7.0 • Science 59%

Open source Java library for computational proteomics

amr-logic-converter • Rank 9.0 • Science 57%

Convert Abstract Meaning Representation (AMR) into first-order logic

AbstractDifferentiation • Rank 12.0 • Science 54%

An abstract interface for automatic differentiation.

libexactreal • Rank 7.0 • Science 59%

Exact Computations with Reals

py-cordex • Rank 12.0 • Science 54%

cordex python tools

pylhc-submitter • Rank 7.0 • Science 59%

Utility HTCondor submitter for parametrized studies

cutevariant • Rank 12.0 • Science 54%

A standalone and free application to explore genetics variations from VCF file

PyMNE • Rank 7.0 • Science 59%

Julia interface to MNE-Python via PythonCall

org.opendc:opendc-compute-api • Rank 12.0 • Science 54%

Collaborative Datacenter Simulation and Exploration for Everybody

cytominer • Rank 11.9 • Science 54%

Methods for Image-Based Cell Profiling

eolang • Rank 11.9 • Science 54%

Command-line toolkit for parsing, compiling, transpiling, optimizing, linking, dataizing, and running EOLANG programs

@stdlib/array • Rank 21.9 • Science 44%

Arrays.

kknn • Rank 16.9 • Science 49%

Weighted k-Nearest Neighbors

core-geonetwork • Rank 11.9 • Science 54%

GeoNetwork is a catalog application to manage spatially referenced resources. It provides powerful metadata editing and search functions as well as an interactive web map viewer. It is currently used in numerous Spatial Data Infrastructure initiatives across the world.

ggVennDiagram • Rank 16.9 • Science 49%

A 'ggplot2' implement of Venn Diagram.

sopt • Rank 6.9 • Science 59%

Sparse OPTimisation using state-of-the-art convex optimisation algorithms.

semantic_version_test • Rank 3.9 • Science 62%

test repo to test automatic semantic versioning

vk-api • Rank 21.9 • Science 44%

Модуль для создания скриптов для ВКонтакте | vk.com API wrapper

https://github.com/adokter/vol2bird • Rank 6.9 • Science 59%

Generates vertical profiles of birds from weather radar volume scans

drugmechdb • Rank 6.9 • Science 59%

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

bedops • Rank 11.9 • Science 54%

:microscope: BEDOPS: high-performance genomic feature operations

https://github.com/bluebrain/voxcell • Rank 11.9 • Science 54%

Tools to work with voxel based brain atlases.

ffpack • Rank 8.9 • Science 57%

Fatigue and fracture package

pgradd • Rank 8.9 • Science 57%

First-Principles Semi-Empirical (FPSE) Group Additivity (GA) method for estimating thermodynamic properties of molecules

GPP, the Generic Preprocessor — Peer-reviewed • Rank 6.9 • Science 59%

GPP, the Generic Preprocessor - Published in JOSS (2020)

https://github.com/a-slide/pybiotools • Rank 6.9 • Science 59%

Collection of tools to manipulate Bioinformatic standard file format + Generic file related function collection

clustering-benchmarks • Rank 8.9 • Science 57%

A framework for benchmarking clustering algorithms

partmc • Rank 6.9 • Science 59%

Particle-resolved stochastic atmospheric aerosol model

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows — Peer-reviewed • Rank 6.9 • Science 59%

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows - Published in JOSS (2021)

rWikiPathways • Rank 16.9 • Science 49%

R package for WikiPathways API

pdbtbx • Rank 6.9 • Science 59%

A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

pie-extended • Rank 8.8 • Science 57%

Extension for pie to include taggers with their models and pre/postprocessors

splat • Rank 11.8 • Science 54%

SpeX Prism Spectral Analysis Toolkit

com.arcadedb:arcadedb-console • Rank 21.8 • Science 44%

ArcadeDB Multi-Model Database, one DBMS that supports SQL, Cypher, Gremlin, HTTP/JSON, MongoDB and Redis. ArcadeDB is a conceptual fork of OrientDB, the first Multi-Model DBMS. ArcadeDB supports Vector Embeddings.

SlideRunner • Rank 6.8 • Science 59%

SlideRunner is a tool for massive cell annotations in whole slide images

graphs.jl • Rank 11.8 • Science 54%

An optimized graphs package for the Julia programming language

summertime • Rank 11.8 • Science 54%

An open-source text summarization toolkit for non-experts. EMNLP'2021 Demo

smo • Rank 8.8 • Science 57%

Robust and unbiased estimation of the background distribution for fluorescence microscopy.

voxelmorph • Rank 19.8 • Science 46%

Unsupervised Learning for Image Registration

HRDS — Peer-reviewed • Rank 6.8 • Science 59%

HRDS: A Python package for hierarchical raster datasets - Published in JOSS (2019)

simStateSpace • Rank 8.8 • Science 57%

Provides a streamlined and user-friendly framework for simulating data in state space models, particularly when the number of subjects/units (n) exceeds one, a scenario commonly encountered in social and behavioral sciences. For an introduction to state space models in social and behavioral sciences, refer to Chow, Ho, Hamaker, and Dolan (2010).

https://github.com/byuflowlab/flowmath.jl • Rank 8.8 • Science 57%

A collection of mathematical functions or convenience methods we frequently use that are not already readily available in Julia packages

mm-react • Rank 11.8 • Science 54%

Official repo for MM-REACT

csdR • Rank 11.8 • Science 54%

Efficient CSD implementation in R

walky • Rank 11.8 • Science 54%

A Highly Parallelized TSP Solver using MPI

osprei • Rank 1.8 • Science 64%

Code for generating Optimal Stability Polynomials in Roots for Explicit time Integration.

omeinfo • Rank 1.8 • Science 64%

Automated retrieval of consistent geographical metadata for microbiome research!

nu.civenv340 • Rank 1.8 • Science 64%

🌊 Supporting Material for CIV-ENV 340: Hydraulics and Hydrology - Spring/2023 - Northwestern University

r4ss • Rank 16.8 • Science 49%

files for r4ss package

PyGBe-LSPR — Peer-reviewed • Rank 6.8 • Science 59%

PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics - Published in JOSS (2017)

@stdlib/assert-is-string • Rank 21.8 • Science 44%

Test if a value is a string.

@stdlib/utils-noop • Rank 21.8 • Science 44%

Function which does nothing.

utils-next-tick • Rank 21.8 • Science 44%

Add a callback to the next tick queue.

uwarl-mujoco-summit-wam-sim • Rank 3.8 • Science 62%

Mujoco Simulation Package for Waterloo steel robot

@stdlib/time • Rank 21.8 • Science 44%

Standard library time utilities.

xrprimer • Rank 11.8 • Science 54%

OpenXRLab foundational library for XR-related algorithms

KLU • Rank 11.8 • Science 54%

Julia Wrapper for the KLU sparse matrix solver from SuiteSparse

optimas • Rank 6.8 • Science 59%

Optimization at scale, powered by libEnsemble

smriprep • Rank 16.8 • Science 49%

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

https://github.com/blockresearchgroup/compas_tna • Rank 11.8 • Science 54%

Form finding of funicular networks in compression with vertical loads using Thrust Network Analysis

extra-map • Rank 11.8 • Science 54%

A group of functions for working with Maps.

https://github.com/chadagreene/cdt • Rank 6.8 • Science 59%

The Climate Data Toolbox for MATLAB

xdg • Rank 21.7 • Science 44%

A XDG Base Directory Specification implementation.

biobb-structure-checking • Rank 11.7 • Science 54%

augur • Rank 11.7 • Science 54%

Python library and web service for Open Source Software Health and Sustainability metrics & data collection. You can find our documentation and new contributor information easily here: https://oss-augur.readthedocs.io/en/main/

PhysioLabXR — Peer-reviewed • Rank 6.7 • Science 59%

PhysioLabXR: A Python Platform for Real-Time, Multi-modal, Brain–Computer Interfaces and Extended Reality Experiments - Published in JOSS (2024)

https://github.com/cdcgov/pyrenew • Rank 6.7 • Science 59%

Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

https://github.com/cbg-ethz/smallgenomeutilities • Rank 8.7 • Science 57%

smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

ftt_standalone • Rank 6.7 • Science 59%

Future Technology Transformation models

benfordslaw • Rank 11.7 • Science 54%

benfordslaw is about the frequency distribution of leading digits.

flaski • Rank 6.7 • Science 59%

Get your science on a leash!

viperleed • Rank 11.7 • Science 54%

ViPErLEED is a package for quantitative low-energy electron diffraction (LEED-IV).

staramr • Rank 11.7 • Science 54%

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

crrt-route-finder • Rank 0.7 • Science 65%

Algorithm to find promising options for combined road-rail transportation in a logistics network

phylostan • Rank 6.7 • Science 59%

Phylogenetic inference using Stan

grpreg • Rank 16.7 • Science 49%

Regularization paths for regression models with grouped covariates

https://github.com/chris-prener/testdriver • Rank 6.7 • Science 59%

R package with data for teaching Statistics and Data Science

cell2fire • Rank 6.7 • Science 59%

For Research Use Only: A Cell Based Forest Fire Growth Model

goatools • Rank 19.7 • Science 46%

Python library to handle Gene Ontology (GO) terms

divest • Rank 16.6 • Science 49%

Get images out of DICOM format quickly

pycsvy • Rank 11.6 • Science 54%

Python reader/writer for CSV files with YAML header information

CusToM — Peer-reviewed • Rank 6.6 • Science 59%

CusToM: a Matlab toolbox for musculoskeletal simulation - Published in JOSS (2019)