GitHub
nano-rave
Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with Guppy).
ai4rs
AI for remote sensing, remote sense, object detection, computer vision, cv
stac2dcache
Python tool to create and manipulate STAC catalogs on a dCache storage system
pillar-centroid-tracker
Purpose-made computer vision software allowing for the measurement of forces produced by fungi
flexlmm
Flexible linear mixed model framework for Genome Wide Association Studies
humidityproject
Research Compendium for the preprint DOI: https://doi.org/10.1101/2022.06.30.497551
counting-ocean-particles
A set of easy codes to process data on marine suspended particles collected with different sensors
pynxtools-em
Harmonize electron microscopy data and metadata for research data management using NeXus
locust_scripts
Python scripts for a generic performance testing infrastructure using Locust.
aws-s3-for-precomputed-api
Using AWS S3 buckets to provide precomputed APIs through the 's3' protocol
timestampcompression
Analysis and implementation of data compression techniques for timestamps (using e.g. Golomb-Rice coding).
blood-vessel-game
A serious game to study the effect of limited field of view in keyhole surgery
cut-the-string
A browser based game looking at the challenges of minimally invasive vasculature surgery
fuji4software
FAIRsFAIR Research Data Object Assessment Service as extended in the FAIR-IMPACT milestone M5.6
scikit-surgeryaudio
scikit-surgeryaudio makes it easy to add audio to your surgical guidance system
entrainment-using-dnn
Unsupervised Auditory and Semantic Entrainment Models with Deep Neural Networks
bird_modelpredict
This module predicts the downloaded bird model onto the variables downloaded in the dataprep module
mtcm_kd
multi-teacher cross-modal knowledge distilaltion for unimodal brain tumor segmentation
the-real-genotools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
cosima-recipes
A cookbook 📒 of recipes (i.e., examples) for analysing ocean and sea ice model output. 👩🏽🍳🌊👨🏻🍳
bluemira
Bluemira is an integrated inter-disciplinary design tool for future fusion reactors. It incorporates several modules, some of which rely on other codes, to carry out a range of typical conceptual fusion reactor design activities.
torchsim-hepba
High-entropy Prussian blue analogues atomistic modeling with ML potentials.
afh-model
ECLIPSE: Systematic falsification framework for consciousness science. Provides rigorous validation protocols preventing post-hoc rationalization in consciousness research.
tyche
Randomly sub-sample sequencing reads to a specified coverage or number of bases.
dynamic-recommendation
Explore methods for dynamic recommendation systems for CSE543. Authored by David Wang, Shirley Li, Kathleen Weng, Donghong Cai, Xinhang Yuan.
ml4bio-workshop
Materials for a workshop introducing machine learning to biologists
msf-practica3
Modelado de Sistemas Fisiológicos. Práctica 3: Sistema Cardiovascular
iot-processing-architecture
Architecture for processing and storing Internet of Things (IoT) data in a scalable way.
segmentation-guided-diffusion
[MICCAI 2024] Easy diffusion models (optionally with segmentation guidance) for medical images and beyond.
wwtp-energy-tariffs
Electricity and natural gas rates of the 100 largest wastewater treatment plants in the United States
pfcampari
Analysis of CaMPARI measurements during the 75th ESA Parabolic Flight Campaign 2021
scaffold_ai
Scaffold AI: Curriculum Recommendation Tool for Sustainability and Climate Resilience
atomgs
[BMVC'24] Official implementation for the paper "AtomGS: Atomizing Gaussian Splatting for High-Fidelity Radiance Field"
