enhancing_reaxff
Jupyter notebooks used for retraining the ReaxFF force field for the inorganic compound LiF.
enhancing_reaxff_dft_database
Database used for retraining the ReaxFF force field for the inorganic compound LiF.
lls-core
Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.
phys2cvr
python module to compute cerebrovascular reactivity mapping and other related maps
pbxplore
A suite of tools to explore protein structures with Protein Blocks :snake:
pyjams
A general Python package with miscellaneous utility functions used in several other packages.
diffsims
An open-source Python library providing utilities for simulating diffraction
ads2inspire
Replace ADS citations with the appropriate INSPIRE ones in latex and bibtex
omc3
Python 3 codes for beam optics measurements and corrections in circular particle accelerators
Capytaine
Capytaine: a Python-based linear potential flow solver - Published in JOSS (2019)
Water Systems Integrated Modelling framework, WSIMOD
Water Systems Integrated Modelling framework, WSIMOD: A Python package for integrated modelling of water quality and quantity across the water cycle - Published in JOSS (2023)
adaptive
:chart_with_upwards_trend: Adaptive: parallel active learning of mathematical functions
anaflow
A python-package containing analytical solutions for the groundwater flow equation
panda-gazebo
A reinforcement learning-oriented Panda Emika Franka gazebo simulation.
turn_by_turn
I/O functionality for turn-by-turn BPM measurements data from different particle accelerators
olsen-randerson
Functions to perform the carbon dioxide flux temporal downscaling described in Olsen and Randerson (2004) and modifications from Fisher et al. (2016)
pythea
PyThea is an open-source software package to perform coronal mass ejection (CME) and shock wave 3D reconstruction using multi-viewpoint remote-sensing observations.
birdhouse-deploy
Scripts and configurations to deploy the various birds and servers required for a full-fledged production platform
generic_parser
A parser for arguments and config files that also allows direct Python input and recursive parsing
TriP
TriP: A Python package for the kinematic modeling of serial-parallel hybrid robots - Published in JOSS (2022)
csg_mri_pipelines
MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
python-package-guide
Python packaging made simple. Recommendations & guidance curated by the pyOpenSci community
pysatmodels
Interface for model analysis and model-data comparisons within the pysat ecosystem
pyglotaran-extras
Extra batteries to super-charge pyglotaran's plotting capabilities.
motila
Pipeline for analyzing microglial fine process motility from 4D/5D multi-photon imaging data
search-api-notebook
Jupyter notebooks for demonstrating and utilizing the Planetary Data System (PDS) Search API
deeplabcut_toolbox
Toolbox with script to analyze DeepLabCut animal behavior experiments
4cat
The 4CAT Capture and Analysis Toolkit provides modular data capture & analysis for a variety of social media platforms.
matilda
Tool for modeling water resources in glacierized catchments. Combines a temperature-index melt model with the conceptual catchment model HBV and a parameterized glacier area/volume re-scaling routine.
cosima-recipes
A cookbook 📒 of recipes (i.e., examples) for analysing ocean and sea ice model output. 👩🏽🍳🌊👨🏻🍳
solar-mach
The Solar MAgnetic Connection Haus (Solar-MACH) tool is a multi-spacecraft longitudinal configuration plotter
p2108-python
Python wrapper for U.S. Reference Software Implementation of Recommendation ITU-R P.2108
ieeh-power-system-data-model
A hierarchical data model for the description of electrical power systems.
fmriflows
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
NeuroCAPs
NeuroCAPs: A Python Package for Performing Co-Activation Patterns Analyses on Resting-State and Task-Based fMRI Data - Published in JOSS (2025)
recirq
Python modules for quantum computing applications and experiments using Cirq. Research using Cirq!
unitary
API library providing common operations for adding quantum behaviors to games.
rabpro
rabpro: global watershed boundaries, river elevation profiles, and catchment statistics - Published in JOSS (2022)
dhdt
Extracting topography from mountain glaciers, through the use of shadow casted by surrounding mountains.
benchscofi
Package which contains implementations of published collaborative filtering-based algorithms for drug repurposing.
tutorials
Jupyter Notebook tutorials using astronomical databases and virtual observatory tools
powerfactory-tools
A Python toolbox for the (external) control of DIgSILENT PowerFactory.