Projects

Updated 9 months ago

symbnet • Rank 2.6 • Science 59%

Teaching materials for SymbNET course: from MAGs to GEMs

assembled genome genomes metabolic metabolism metagem metagenome modeling models symbnet

Updated 9 months ago

cpg-gnomad • Rank 19.6 • Science 36%

Hail helper functions for the gnomAD project and Translational Genomics Group

exomes genomes genomics hail

Updated 9 months ago

bigsdb • Rank 7.2 • Science 36%

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

bacteria bioinformatics database genomes mlst typing

Updated 9 months ago

https://github.com/biojulia/genomegraphs.jl • Rank 6.4 • Science 23%

A modern genomics framework for julia

bio bioinformatics bioinformatics-analysis biology genome-assembly genome-graph genome-sequencing genomes genomics julia

Updated 9 months ago

https://github.com/asadprodhan/downloading_genomes_from_refseq • Science 10%

Downloading Genomes from RefSeq

download genomes refseq

Updated 9 months ago

genome_updater • Science 67%

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

bash bioinformatics database download genbank genome genomes genomics ncbi refseq sequence

Updated 9 months ago

metasbt • Science 57%

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

bioinformatics genomes metagenome-assembled-genomes metagenomics microbial-genomics sequence-bloom-trees

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

symbnet • Rank 2.6 • Science 59%

cpg-gnomad • Rank 19.6 • Science 36%

bigsdb • Rank 7.2 • Science 36%

https://github.com/biojulia/genomegraphs.jl • Rank 6.4 • Science 23%

https://github.com/asadprodhan/downloading_genomes_from_refseq • Science 10%

genome_updater • Science 67%

metasbt • Science 57%