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jcvi • Rank 16.7 • Science 67%

Python library to facilitate genome assembly, annotation, and comparative genomics

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TitanCNA • Rank 17.7 • Science 10%

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

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https://github.com/ampliconsuite/ampliconreconstructorom • Science 10%

Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data