https://github.com/astrazeneca/chemicalx
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
geoconv
A Python library for end-to-end learning on surfaces. It implements pre-processing functions that include geodesic algorithms, neural network layers that operate on surfaces, visualization tools and benchmarking functionalities.
https://github.com/bioinfomachinelearning/deepinteract
A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)
https://github.com/awslabs/dgl-lifesci
Python package for graph neural networks in chemistry and biology
https://github.com/atomicarchitects/dens
[TMLR 2024] Generalizing Denoising to Non-Equilibrium Structures Improves Equivariant Force Fields
learning_on_cortical_meshes_with_surface_vision_transformers
Code accompanying the master thesis: Learning on Cortical Meshes with Surface Vision Transformers (SiT)
masif-neosurf
MaSIF-neosurf: surface-based protein design for ternary complexes.
https://github.com/atomicarchitects/equiformer
[ICLR 2023 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs
https://github.com/atomicarchitects/equiformer_v2
[ICLR 2024] EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations