Projects

Updated 10 months ago

igneous-pipeline • Rank 19.3 • Science 77%

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

ccl cloud connected-components-labeling connectomics docker downsample downsampling kubernetes meshing multi-resolution neuroglancer python python3 skeletonization visualization volumetric-data

Updated 10 months ago

kimimaro • Rank 19.1 • Science 77%

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

biomedical-image-processing centerline centerline-extraction computer-vision-algorithms connectomics cross-section cross-section-area image-segmentation medial-axis-transform python skeletonization skeletons teasar volumetric-data voxel

Updated 10 months ago

https://github.com/bluebrain/ultraliser • Science 36%

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

astrocyte mesh morphology neuron neurons skeletonization skeletons vasculature volume

ecosyste.ms

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Open Source Science

igneous-pipeline • Rank 19.3 • Science 77%

kimimaro • Rank 19.1 • Science 77%

https://github.com/bluebrain/ultraliser • Science 36%